Locus 91

Sequence ID 3R_DroMel_CAF1
Location 567,988 – 568,081
Length 93
Max. P 0.572011
window152

overview

Window 2

Location 567,988 – 568,081
Length 93
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.89
Mean single sequence MFE -24.85
Consensus MFE -14.17
Energy contribution -15.37
Covariance contribution 1.20
Combinations/Pair 1.25
Mean z-score -1.67
Structure conservation index 0.57
SVM decision value 0.08
SVM RNA-class probability 0.572011
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 567988 93 + 27905053
CUUCAUCACGGCUACUUCAUCUGCCCUCAUGGAGAUAUCCACAUCCAUAACUUCAUCAGCCCCGGU---------GUCUUCGGUAGCCUCCACCGCUGGAGA
.........(((((((.((((.(..((.((((((.(((........))).)))))).))..).)))---------).....)))))))((((....)))).. ( -22.60)
>DroPse_CAF1 5622 102 + 1
CUUGAACGUAGUGGCCUCUUCAACCUGCACAGAGACGUCCACGUCCAUGGCCUCGUAAUCCUCGCUGCCCAUGCUCUCUUCGGUGGCCUCCACUGCCGGCGA
.(((...(((((((............((.((..((((....))))..))))............((..((.(........).))..))..)))))))...))) ( -25.50)
>DroSec_CAF1 7022 93 + 1
AUUCAUCACGGCUACUUCAUCUGCCCUCAUGGAGAUAUCUACAUCCAUGACUUCAUCAGCCCCGGU---------AUCUUCGGUGGCCUCCACCGCUGGAGA
.........(((..........))).(((((((..........)))))))........(((((((.---------....)))).)))(((((....))))). ( -27.20)
>DroSim_CAF1 7049 93 + 1
CUUCAUCACGGCUACUUCAUCUGCCCUCAUGGAGAUAUCUACAUCCAUGACUUCAUCAGCCCCGGU---------AUCUUCGGUGGCCUCCACCGCUGGAGA
.........(((..........))).(((((((..........)))))))........(((((((.---------....)))).)))(((((....))))). ( -27.20)
>DroEre_CAF1 6473 93 + 1
CUUCAUGGCGGCUACAUCAUCUCCCUUCAUAGAGAUAUCUACAUCCUUGAAGUCAUCAGCCCCGGU---------AUUUUCAGUGGCCUCCAAUGCUGGAGA
((((((((.((((((...(((((........)))))...........(((((..(((......)))---------..))))))))))).)))....))))). ( -25.90)
>DroYak_CAF1 7210 93 + 1
CUUCAAUACGGCUACAUCAUAUGCCCUCAUGGAGACAUCUACAUCCAUAACGUCAUCAGCCCCGGU---------AUCUUCGGUGGCCCCCACUGCUGGAGA
(((((....(((..........)))...(((((..........)))))..........(((((((.---------....)))).))).........))))). ( -20.70)
>consensus
CUUCAUCACGGCUACUUCAUCUGCCCUCAUGGAGAUAUCUACAUCCAUGACUUCAUCAGCCCCGGU_________AUCUUCGGUGGCCUCCACCGCUGGAGA
.........(((..........))).(((((((..........)))))))..........................((((((((((......)))))))))) (-14.17 = -15.37 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:48 2006