Locus 9098

Sequence ID 3R_DroMel_CAF1
Location 24,280,409 – 24,280,507
Length 98
Max. P 0.749521
window14561

overview

Window 1

Location 24,280,409 – 24,280,507
Length 98
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 85.57
Mean single sequence MFE -24.80
Consensus MFE -15.58
Energy contribution -16.77
Covariance contribution 1.19
Combinations/Pair 1.17
Mean z-score -2.27
Structure conservation index 0.63
SVM decision value 0.47
SVM RNA-class probability 0.749521
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24280409 98 - 27905053
GGGUUGCAACAGUAUGGGUGGAGCAGCUUUCCUUUGUGGAAA-----GGGGCAGAGGGGAAGUGACGAAAGCACCAACGAUGGCAAUGAAGUGAAAAGAAAAU
..(((((....((...((((.....((((((((((((.....-----...))))).)))))))..(....))))).))....)))))................ ( -24.80)
>DroSec_CAF1 103155 103 - 1
GGGUUGCAACAGUAUGGGAGGAGCAGCUUUCCUUUGUGGAAAGGGAAGGGGCAGAAGGGAAGUGACGAAAGCACCAGCGAUGGCAAUGAAGUGAAAAGAAAAU
..(((((....((.(((.....((..(((((((((....)))))))))..))..........((.(....))))))))....)))))................ ( -25.10)
>DroSim_CAF1 108026 98 - 1
GGGUUGCAACAGUAUGGGUGGAGCAGCUUUCCUUUGUGGAAA-----GGGGCAAAAGGGAAGUGACGAAAGCACCAACGAUGGCAAUGAAAUGAAAAGAAAAU
..(((((....((...((((.....((((((((((((.....-----...)).))))))))))..(....))))).))....)))))................ ( -24.70)
>DroEre_CAF1 111555 98 - 1
GGGUUGCAACCGCGUGGGUGGAGCUUCGCUCAAUUGGCGAGG-----GGACUACAGAGGAAGUGACGAAAGCAGCAACGAUGGCAAUGAAGUGAAAAGAAAAU
..(((((..((((....)))).(((((((((..(((...((.-----...)).)))..).)))))....))).)))))......................... ( -24.60)
>consensus
GGGUUGCAACAGUAUGGGUGGAGCAGCUUUCCUUUGUGGAAA_____GGGGCAGAAGGGAAGUGACGAAAGCACCAACGAUGGCAAUGAAGUGAAAAGAAAAU
..(((((....((...((((.....((((((((((((.............))).)))))))))..(....))))).))....)))))................ (-15.58 = -16.77 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:32 2006