| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,067,770 – 3,067,873 |
| Length | 103 |
| Max. P | 0.688059 |
| Location | 3,067,770 – 3,067,873 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.37 |
| Mean single sequence MFE | -28.09 |
| Consensus MFE | -14.30 |
| Energy contribution | -14.66 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3067770 103 - 27905053 CAGUUGCUGAAAUAACGCACUGCAACAUCAAUUGGCUUGCAAGA---AUUGCGGCAGCC-GGUG------GGCCAAAGGCAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA ..(((((..............)))))....(((((((((((...---..))))..))))-))).------.(((...))).....((.(((((.(((....))).))))))). ( -30.44) >DroVir_CAF1 112210 102 - 1 C-------ACAACAACACACUGCCACAUCUAUGGGCUGUUAAGA---AUUGCGAUUGCU-GUUCGCUUGUGGCCAAAAACAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA .-------...........(((((.(((.((((((((((...((---((.((....)).-))))((((((........))))).)))).))).))))...)))...))))).. ( -25.80) >DroPse_CAF1 55187 106 - 1 CUAUUGCAACAAUAACGCACUCCAACAUCAAUUGGCUGCCAACAACAAUCUCCAGAGCU-CUGA------GCUCUGCCCCAAGACGCAUGCAUCGUAAAUAUGCAAGGCAGCA ....(((.........)))...............((((((............((((((.-....------))))))............(((((.......))))).)))))). ( -26.40) >DroGri_CAF1 68885 103 - 1 A-------ACAACAACGCACUGCAACAUCAAUUGGCUGCCAAGA---AUUGCGAUUGCUUGUUUGCUUUCGGCCAAAAAGAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA .-------........((..(((..(.((..((((((((.....---...))((..((......))..))))))))...)).)..)))(((((.(((....))).))))))). ( -27.00) >DroMoj_CAF1 82568 101 - 1 U-------AC-UCAACGCACCGCCUCAUCAAUGGGCUGGCAAGU---AUUGCGAUUGCU-AUUCGCUUAUGGCCAAAAACAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA .-------..-..........(((.((....)))))((((..((---(..((((.....-..)))).))).))))..........((.(((((.(((....))).))))))). ( -27.00) >DroAna_CAF1 71265 103 - 1 CAAUUGCAACAAUAACGCACUGCAACAUCAAUUGGCUGCCAAGA---AUUGCGGCAGCU-GGUG------GGCCAAAGGCAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA ................((..(((.......((..((((((....---.....)))))).-.)).------.(((...))).....)))(((((.(((....))).))))))). ( -31.90) >consensus C_______ACAACAACGCACUGCAACAUCAAUUGGCUGCCAAGA___AUUGCGAUAGCU_GUUC______GGCCAAAAACAAGACGCAUGCCUCGUAAAUAUGCAAGGCAGCA .................................((((.............((....))............))))...........((.(((((.(((....))).))))))). (-14.30 = -14.66 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:08 2006