Locus 907

Sequence ID 3R_DroMel_CAF1
Location 3,062,156 – 3,062,266
Length 110
Max. P 0.726339
window1439

overview

Window 9

Location 3,062,156 – 3,062,266
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.19
Mean single sequence MFE -30.55
Consensus MFE -17.00
Energy contribution -16.20
Covariance contribution -0.80
Combinations/Pair 1.27
Mean z-score -2.36
Structure conservation index 0.56
SVM decision value 0.41
SVM RNA-class probability 0.726339
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3062156 110 + 27905053
-CGGCCG-UUCGAAU-UUGAG-CUCGCUUGCCAAUCAGCGGGCACAAAUUAUGGGCAAUUGUUUAAUUUGAAUAAGGCAGCGAUAGCUAUAGCAAUA------GCAAUAGCAACACCGAC
-((((((-(((((((-(((.(-((((((........))))))).)))))).)))))..((((((.....))))))))).......(((((.((....------)).))))).....)).. ( -35.50)
>DroSec_CAF1 49098 104 + 1
-CGGCCG-UUCGAAU-UUGAG-UCCGCUUGCCAAUCAGCGGGCACAAAUUAUGGGCAAUUGUUUAAUUUGAAUAAGGCAGCAAUAGCUAUAGCAA------------UAGCAGCACCGAC
-((((((-(((((((-(((.(-((((((........))))))).)))))).)))))..((((((.....))))))))).((....(((((....)------------)))).))..)).. ( -32.60)
>DroSim_CAF1 50293 116 + 1
-CGGCCG-UUCGAAU-UUGAG-CCCGCUUGCCAAUCAGCGGGCACAAAUUAUGGGCAAUUGUUUAAUUUGAAUAAGGCAGCAAUAGCUAUAGCAAUAGCAAUAGCAAUAGCAACACCGAC
-((((((-(((((((-(((.(-((((((........))))))).)))))).)))))..((((((.....))))))))).((.((.(((((.((....)).))))).)).)).....)).. ( -40.80)
>DroEre_CAF1 50459 98 + 1
-CGGCCG-UUCGAAU-UUGAG-UCCGAUUGCCAAUCAGCGGGCACAAAUUAUGGGCAAUUGUUUAAUUUGAAUAAGGCAGCCAUAG------------------CAAUAGCAUCAGCAAC
-..((((-(((((((-(((.(-((((.(((.....)))))))).)))))).)))))..((((((.....))))))))).((....(------------------(....))....))... ( -25.90)
>DroYak_CAF1 51104 98 + 1
-CGGCCG-UUCAAAU-UUGAG-CCCGAUUGCCAAUCAGCGGGCACAAAUUAUGGACAAUUGUUUAAUUUGAAUAAGGCAGAAAUAG------------------CAAUAACAACAGCAAC
-..((((-(((((((-(((.(-((((.(((.....)))))))).)))))).)))))..((((((.....))))))))).......(------------------(..........))... ( -27.40)
>DroPer_CAF1 49029 100 + 1
UGGGCCGAAUCGAAUUUUGAGACCCGGUUGCCAAUCAACGGACAUAAAUUAUGGGCAAUUGUUUAAUUUGUUUAAGGCAGCAAUAGC---AGCAA------------CAGCA-----AAC
.((((((((......)))).).)))(((((((..((....))((((...)))))))))))......((((((....((.((....))---.))..------------.))))-----)). ( -21.10)
>consensus
_CGGCCG_UUCGAAU_UUGAG_CCCGCUUGCCAAUCAGCGGGCACAAAUUAUGGGCAAUUGUUUAAUUUGAAUAAGGCAGCAAUAGC___AGCAA_________CAAUAGCAACACCAAC
...(((..(((((((.(((.(.((((.(((.....)))))))).)))....(((((....))))))))))))...))).......................................... (-17.00 = -16.20 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:07 2006