Locus 906

Sequence ID 3R_DroMel_CAF1
Location 3,057,069 – 3,057,159
Length 90
Max. P 0.918724
window1438

overview

Window 8

Location 3,057,069 – 3,057,159
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 81.12
Mean single sequence MFE -26.11
Consensus MFE -18.81
Energy contribution -20.15
Covariance contribution 1.34
Combinations/Pair 1.31
Mean z-score -2.53
Structure conservation index 0.72
SVM decision value 1.12
SVM RNA-class probability 0.918724
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3057069 90 - 27905053
-UUUUUGCCCAAAAAUUCUUGUGCAUUUCCGUACAGC-GUUUUUGUGUGGACCACUCAUUAGCAAUUUGUGUGGCUUUGGGGCGAGAAUGAG
-(((((((((((((((.((.((((......)))))).-))))))....((.((((.((.........)).))))))...))))))))).... ( -25.50)
>DroVir_CAF1 98737 84 - 1
UUUUUUGCACAAAAAUUCUUGUGCAUUUCCGCAGCUCUGUUUUUUUGCCCGCUGCUCAUUUGCAAAUUGUG-UUC---GGUGCAAAAA----
.(((((((((..((.......((((.....(((((...((......))..))))).....)))).......-)).---.)))))))))---- ( -23.04)
>DroGri_CAF1 56483 83 - 1
UUUUUUGCACAAGAAUUCUUGUGCAUUUCCGCAGAGCAGUUUUU--GCAUGCUGCUCAUUUGCAAUUUGUGUGGC---GUAGCAAAAA----
.....((((((((....)))))))).....((((((((((....--....)))))))...)))..(((((.....---...)))))..---- ( -27.50)
>DroSec_CAF1 44045 90 - 1
-UUUUUGCCCAAAAAUUCUUGUGCAUUUCCGUACAGC-GUUUUUGUGUGGGCCACUCAUUUGCAAUUUGUGUGGCUUUGGGACGAGAAUGAG
-((((((((((((...............((((((((.-....))))))))(((((.((.........)).))))))))))).)))))).... ( -26.10)
>DroEre_CAF1 45484 90 - 1
-UUUUUGCUCAAAAAUUCUUGUGCAUUUCCGUACAGC-GUUUUUGUGUGGGCCACUCAUUUGCAAUUUGUGUGGCUCUGGGGCGAGAAUGAA
-(((((((((((((((.((.((((......)))))).-))))))....(((((((.((.........)).)))))))..))))))))).... ( -29.20)
>DroYak_CAF1 46098 90 - 1
-UUUUUGCCCAAAAAUUCUUGUCCAUUUCCGUACAGC-GUUUUUGUGUGGGCCACUCAUUUGCAAUUUGCGCGGCUUUGGGGCGAGAAUGAA
-.............((((((((((....((((...((-(...(((((((((...)))))..))))..))))))).....))))))))))... ( -25.30)
>consensus
_UUUUUGCCCAAAAAUUCUUGUGCAUUUCCGUACAGC_GUUUUUGUGUGGGCCACUCAUUUGCAAUUUGUGUGGCUUUGGGGCGAGAAUGA_
.(((((((((((((((...(((((......)))))...))))))....(((((((.((.........)).)))))))..))))))))).... (-18.81 = -20.15 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:06 2006