Locus 9057

Sequence ID 3R_DroMel_CAF1
Location 24,211,790 – 24,211,903
Length 113
Max. P 0.881275
window14503

overview

Window 3

Location 24,211,790 – 24,211,903
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.84
Mean single sequence MFE -32.73
Consensus MFE -21.08
Energy contribution -21.05
Covariance contribution -0.03
Combinations/Pair 1.10
Mean z-score -1.78
Structure conservation index 0.64
SVM decision value 0.92
SVM RNA-class probability 0.881275
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24211790 113 - 27905053
UGCUGCUGCUCCAAC---UACCACUGAGC---UCC-UCUGCCCCCCGCAGUUCGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCGGCAGGAAGAAUCAAGUAGUUU
.((((((((((....---.......))))---...-((((((....((((..((((.(((.....))).)))))))).(((((.......)))))...))))))........)))))).. ( -34.20)
>DroPse_CAF1 35771 106 - 1
UGCUGCUAGUGC-----------CUUGGC---CCCUGCUGUGCCGUGCCGUCUGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCAGCAGGAAGAAUCAAGUAGUUU
.((((((...((-----------....))---.(((((((.((.((((((.(...............))))))).)).(((((.......)))))..)))))))........)))))).. ( -36.06)
>DroGri_CAF1 8444 104 - 1
UGCUGCUUUUGCUGU---UGCUAUU-----------GCU--GCUGCGUUGCCUGCUUUAUUUAUUAUGUGGUGCUGCUGUGCUUACUUUUGGCACUCCAGCAGGAAGAAUCAAGUAGUAU
((((((((..((...---.))..((-----------.((--((((.((.(((..(............)..).)).)).(((((.......)))))..)))))).)).....)))))))). ( -30.30)
>DroYak_CAF1 36958 119 - 1
UGCUGCCGCUCCAACUACUACCACUGAGCUGCUCC-UCGGCCCCCCGCAGUCCGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCGGCAGGAAGAAUCAAGUAGUUU
((((((.((((..............)))).))(((-(..(((....(((((((((............)))).))))).(((((.......)))))...))))))).......)))).... ( -33.64)
>DroAna_CAF1 32888 96 - 1
UGCUCCUGA-----------------------UUC-CCCGUACCCCGUCGUCUGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCAGCAGGAAGAAUCAAGUAGUUU
((((..(((-----------------------(((-.((..............(((.(((.....))).)))((((..(((((.......)))))..)))).))..)))))))))).... ( -26.10)
>DroPer_CAF1 35803 106 - 1
UGCUGCUAGUGC-----------CUUGGC---CCCUGCUGUGCCGUGCCGUCUGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCAGCAGGAAGAAUCAAGUAGUUU
.((((((...((-----------....))---.(((((((.((.((((((.(...............))))))).)).(((((.......)))))..)))))))........)))))).. ( -36.06)
>consensus
UGCUGCUGCUGC___________CU__GC___UCC_GCUGUGCCCCGCCGUCUGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCAGCAGGAAGAAUCAAGUAGUUU
.((((((..............................................(((.(((.....))).)))((((..(((((.......)))))..))))...........)))))).. (-21.08 = -21.05 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:41 2006