Locus 905

Sequence ID 3R_DroMel_CAF1
Location 3,055,559 – 3,055,653
Length 94
Max. P 0.710818
window1437

overview

Window 7

Location 3,055,559 – 3,055,653
Length 94
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 80.61
Mean single sequence MFE -21.12
Consensus MFE -15.23
Energy contribution -14.95
Covariance contribution -0.28
Combinations/Pair 1.15
Mean z-score -1.47
Structure conservation index 0.72
SVM decision value 0.37
SVM RNA-class probability 0.710818
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3055559 94 + 27905053
CGUAUGUUGCCUCAUAGCAAUUGGAACUGGCUGAGCGGCGUUUUCAAUUGUUAUCUUUUGAUAUU----------UUUGGCUAUUAGGGA--AAACUCGGCACAUC
...((((.(((..(((((((((((((...(((....)))..))))))))))))).((((((((..----------......)))))))).--......))))))). ( -22.80)
>DroPse_CAF1 42183 89 + 1
CGAAUAUUGCCUCAUAUCAAUUGAAACUGGCUGAGCGGCAUUUUCAAUUGUUAUCUUUUGAUAUU----------UCUCUCUUUUUUU-------UUUGGCACAUC
.......((((......(((((((((...(((....)))..))))))))).((((....))))..----------.............-------...)))).... ( -18.30)
>DroSec_CAF1 42552 94 + 1
CGUUGGUUGCCUCAUAGCAAUUGGAACUGGCUGAGCGGCGUUUUCAAUUGUUAUCUUUUGAUAUU----------UUCGGCUAUUAGUGA--AAACUCGGCACAUC
.((((...(((..(((((((((((((...(((....)))..))))))))))))).....((....----------.)))))....(((..--..)))))))..... ( -23.30)
>DroSim_CAF1 42771 94 + 1
CGUUGGUUGCCUCAUAGCAAUUGGAACUGGCUGAGCGGCGUUUUCAAUUGUUAUCUUUUGAUAUU----------UUCGGCUAUUAGUGA--AAACUCGGCACAUC
.((((...(((..(((((((((((((...(((....)))..))))))))))))).....((....----------.)))))....(((..--..)))))))..... ( -23.30)
>DroAna_CAF1 58930 104 + 1
--UAGAUUGCCUCAUAUCAAUUGAAACUGUCUGAGCGGCGUUUUCAAUUGUUAUCUUUUGAUAUUUAGUAUUUUUUUUGGCUAUUACCGAUGAGACUUUUCGCGUC
--..(((.(((......(((((((((.((((.....)))).))))))))).((((....))))...............))).)))...((((.((....)).)))) ( -20.70)
>DroPer_CAF1 42219 88 + 1
CGAAUAUUGCCUCAUAUCAAUUGAAACUGGCUGAGCGGCAUUUUCAAUUGUUAUCUUUUGAUAUU----------UCUCUCUUUU-UU-------UUUGGCACAUC
.......((((......(((((((((...(((....)))..))))))))).((((....))))..----------..........-..-------...)))).... ( -18.30)
>consensus
CGUAGAUUGCCUCAUAGCAAUUGAAACUGGCUGAGCGGCGUUUUCAAUUGUUAUCUUUUGAUAUU__________UUUGGCUAUUAGUGA__AAACUCGGCACAUC
.......((((......(((((((((.((.(.....).)).))))))))).((((....))))...................................)))).... (-15.23 = -14.95 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:05 2006