| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,051,965 – 3,052,055 |
| Length | 90 |
| Max. P | 0.514174 |
| Location | 3,051,965 – 3,052,055 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 87.83 |
| Mean single sequence MFE | -23.46 |
| Consensus MFE | -15.58 |
| Energy contribution | -15.42 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3051965 90 + 27905053 GUUCAAGGAUAAACGGCA---GCGGUAGCUGCUCGGCUAAGAAUAAACCCUUGGGAGGGGGCUGGGCCAAAAAAA-GACAAA-UGAAAAACAACU .((((.........((((---((....)))))).((((.((......((((....))))..)).)))).......-......-))))........ ( -24.20) >DroSec_CAF1 38905 90 + 1 GUUCAAGGAUAAAUGGCA---GCGGUAGCUGCUCGGCUAAGAACAAACCCUUGGGAGGGGCCUGGGCCAAAAAAA-GACAAA-UGAAAAGCAACU .((((.........((((---((....)))))).((((.((..(...((....))...)..)).)))).......-......-))))........ ( -23.10) >DroSim_CAF1 39167 90 + 1 GUUCAAGGAUAAACGGCA---GCGGUAGCUGCUCGGCUAAGAACAAACCCUUGGGAGGGGGCUGGGCCAAAAAAA-GACAAA-UGAAAAACAACU .((((.........((((---((....)))))).((((.((..(...((....))...)..)).)))).......-......-))))........ ( -24.30) >DroEre_CAF1 40106 90 + 1 GUUCAAGGAUAAACGGCA---GCGGUAGCUGCUCGGCUAAGAACAAACCCUUGGGAGGGGGCUGGGCCAAAAAUA-GACAAA-AGAAAAACCACC ......((......((((---((....)))))).((((.((..(...((....))...)..)).)))).......-......-.......))... ( -24.60) >DroAna_CAF1 54894 95 + 1 GUUCAAGGAUGAACAGCAGUAGCAGUAGCCGAUCAGCUCAGAAUAAACCCUUGGGAGGGGGCUGGGCUAACAAAAACAAAAACUAAAAAUCAAAA (((((....))))).....((((..(((((((.....))........((((....))))))))).)))).......................... ( -21.10) >consensus GUUCAAGGAUAAACGGCA___GCGGUAGCUGCUCGGCUAAGAACAAACCCUUGGGAGGGGGCUGGGCCAAAAAAA_GACAAA_UGAAAAACAACU ..............(((........(((((....)))))....((..((((.....))))..)).)))........................... (-15.58 = -15.42 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:04 2006