Locus 9033

Sequence ID 3R_DroMel_CAF1
Location 24,181,599 – 24,181,708
Length 109
Max. P 0.766849
window14469

overview

Window 9

Location 24,181,599 – 24,181,708
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.98
Mean single sequence MFE -20.28
Consensus MFE -15.33
Energy contribution -15.30
Covariance contribution -0.03
Combinations/Pair 1.12
Mean z-score -1.19
Structure conservation index 0.76
SVM decision value 0.52
SVM RNA-class probability 0.766849
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24181599 109 + 27905053
UUCGGCAUUGUACACGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACUGGCC-------CCGA---CUUACCGACCAACCAACAGCAAUACA-
...(((..((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).))))...)))-------....---..........................- ( -19.60)
>DroPse_CAF1 4087 102 + 1
UUCGGCAUUGUACAUGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACAUGCCCAUGCCCCCGAAAACCUACCUAC------------------
...(((((((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).)))).))))).......................------------------ ( -20.00)
>DroEre_CAF1 7614 89 + 1
CUCGGCAUUGUACACGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACUGGC---------------------CACC----------ACUACAU
...(((..((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).))))...))---------------------)...----------....... ( -20.50)
>DroYak_CAF1 5222 102 + 1
CUCGGCAUUGUGCACGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACUGACC-----CCCCGA---CUUACCCACC----------GAUACAU
.((((....(((((((((.(((...((((((.....(((((....)))))..))))))..))))))))..)))).....-----..))))---..........----------....... ( -19.00)
>DroAna_CAF1 3418 93 + 1
UUCGGCAGUGUACAUGAAAUUGUUAUAAAAAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACUGGCA------AACGA---CUUUCCGGG------------------
...(.(((((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).))))))).).------..((.---.....))..------------------ ( -22.60)
>DroPer_CAF1 4066 102 + 1
UUCGGCAUUGUACAUGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACAUGCCCAUGCCCCCGAAAACCUACCUAC------------------
...(((((((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).)))).))))).......................------------------ ( -20.00)
>consensus
UUCGGCAUUGUACACGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACUGGCC______CCCGA___CUUACCCAC__________________
...(((..((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).))))...)))......................................... (-15.33 = -15.30 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:11 2006