Locus 903

Sequence ID 3R_DroMel_CAF1
Location 3,043,676 – 3,043,783
Length 107
Max. P 0.539215
window1435

overview

Window 5

Location 3,043,676 – 3,043,783
Length 107
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 78.94
Mean single sequence MFE -31.79
Consensus MFE -19.19
Energy contribution -18.33
Covariance contribution -0.85
Combinations/Pair 1.46
Mean z-score -1.48
Structure conservation index 0.60
SVM decision value 0.01
SVM RNA-class probability 0.539215
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3043676 107 - 27905053
GCAUUGUGUCCUUCACGGCGUCAGCGGGCAUAGUGGCUCUUACCUUUGUCAUUAUAGUUGAGCUUCUGCCCUUUAAGGUAAGCUCGGCUUCGUUUAUUU-GUUAAAGG
.((((((((((......((....)))))))))))).......((((((.((....(((((((((..((((......))))))))))))).........)-).)))))) ( -32.52)
>DroSec_CAF1 30664 107 - 1
GCAUUGUGUCCUUCACGGCGUCAGCGGGCAUAGUGGCUCUUACCUUUGUCAUCAUAGUUGAGCUUUUGCCCUUUAAGGUAAGCUCGGCUACGCUUCUAU-GUCAAAGG
.((((((((((......((....)))))))))))).......((((((.((((.((((((((((..((((......)))))))))))))).).....))-).)))))) ( -37.50)
>DroSim_CAF1 30999 107 - 1
GCAUUGUGUCCUUCACGGCGUCAGCGGGCAUAGUGGCUCUUACCUUUGUCAUCAUAGUUGAGCUUCUGCCCUUUAAGGUAAGCUCGGCUAUGCUAAUUU-GUUAAAGA
.((((((((((......((....))))))))))))........(((((.((.((((((((((((..((((......))))))))))))))))......)-).))))). ( -35.20)
>DroEre_CAF1 31861 107 - 1
GCAUUGUGGCUUACACGGCGUCAGUGGGCAUAGUGGCUCUUACCUUUGUCAUCAUAGUUGAGCUUCUGCCCGUUAAGGUAAGCGCGUAUACGCUUAUUU-GUCAAAGG
.....(((.....)))(((......(((((....(((((....((.((....)).))..)))))..)))))....(((((((((......)))))))))-)))..... ( -31.10)
>DroWil_CAF1 42089 108 - 1
GCUUUGUGGCCAUUAUAGCCUCAAUAGGUGUAAUAGCCUUGAUUUUCAUUAUUAUCAUAGAGCUUUUGCCGGCCAAGGUGAGUUUGGAUAUCUUCAAUUUUGUAACUG
((((..(((((......((((....))))((((.(((((((((..........)))).)).))).)))).)))))....))))(((((....)))))........... ( -23.80)
>DroYak_CAF1 32406 107 - 1
GCAUUGUGUCUUACACGGUGUCUGUGGGCAUAGUGGCUCUCACAUUUGUCAUCAUAGUUGAGCUUCUGCCCUUAAAGGUAAGCUCGGGUAUGCUUAUUU-CUCAAAGG
((((((((.....))))))))..((((((((((((((..........))))).....(((((((..((((......))))))))))).)))))))))..-........ ( -30.60)
>consensus
GCAUUGUGUCCUUCACGGCGUCAGCGGGCAUAGUGGCUCUUACCUUUGUCAUCAUAGUUGAGCUUCUGCCCUUUAAGGUAAGCUCGGCUACGCUUAUUU_GUCAAAGG
((..((((.....))))))......(((((....(((((..((...((....))..)).)))))..)))))....((((((((........))))))))......... (-19.19 = -18.33 +  -0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:03 2006