Locus 9025

Sequence ID 3R_DroMel_CAF1
Location 24,174,420 – 24,174,524
Length 104
Max. P 0.928959
window14458

overview

Window 8

Location 24,174,420 – 24,174,524
Length 104
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 83.49
Mean single sequence MFE -40.68
Consensus MFE -26.96
Energy contribution -29.96
Covariance contribution 3.00
Combinations/Pair 1.20
Mean z-score -2.50
Structure conservation index 0.66
SVM decision value 1.19
SVM RNA-class probability 0.928959
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24174420 104 + 27905053
--AAUCGCUUCAGUUGUGGCCCGUUGAUGGCUCCACUUGGUCGAUGGGGGAUUGGCUUUGGUCUUGGGCUGCAGCUGGAGCGUGAGUUUAAUCGAAUUCGAGCAGA
--...(((((((((((..(((((..((((....).(..(((((((.....)))))))..)))).)))))..)))))))))))(((((((....)))))))...... ( -43.10)
>DroSec_CAF1 14990 104 + 1
--AAUCGCUUCAGUUGUGGCCCGUUGAUGGCUCCACUUGGUCGAUGUGGGAUUGGCUUUGGUCUUGGGCUGCAGCUGGAGCAUGAGUUUAAUCGAAUUCGAGCAGA
--..((((((((((((..(((((..(((((((((((.........))))....))))...))).)))))..))))))))))..((((((....))))))))..... ( -43.20)
>DroSim_CAF1 14917 104 + 1
--AAUCGCUUCAGUUGUGGCCCGUUGAUGGCUCCACUUGGUCGAUGGGGGAUUGGCUUUGGUCUUGGGCUGCAGCUGGAGCGUGAGUUUAAUCGAAUUCGAGCAGA
--...(((((((((((..(((((..((((....).(..(((((((.....)))))))..)))).)))))..)))))))))))(((((((....)))))))...... ( -43.10)
>DroEre_CAF1 8315 106 + 1
CGCCUCGUUUCAGUUGCGGCCCGUUGAUGGCUCCACCUGGUCGAUGGGGGAUUGCUUUUGGAGCUGGGCAGCCGCUGGAGCGUGAGUUUAAUCGAAUUUGAGCAGA
...(.(((((((((.((.((((......(((((((...((.((((.....))))))..))))))))))).)).))))))))).).((((((......))))))... ( -40.60)
>DroYak_CAF1 8647 93 + 1
CGCCUCGUUUCAGUUGCGGCCCGUUGAUGGCUCCACUUGGUCGUUGGGGGACUGCGGCUAG------U-------GAGAGCGUGAGUUUAAUCGAAUUUAAUCAGA
(((((((....(((((((((((.(..((((((......))))))..)))).))))))))..------)-------))).)))(((((((....)))))))...... ( -33.40)
>consensus
__AAUCGCUUCAGUUGUGGCCCGUUGAUGGCUCCACUUGGUCGAUGGGGGAUUGGCUUUGGUCUUGGGCUGCAGCUGGAGCGUGAGUUUAAUCGAAUUCGAGCAGA
.....(((((((((((((((((.....(((((......)))))....((((((......)))))))))))))))))))))))(((((((....)))))))...... (-26.96 = -29.96 +   3.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:01 2006