| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,040,581 – 3,040,688 |
| Length | 107 |
| Max. P | 0.630263 |
| Location | 3,040,581 – 3,040,688 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.66 |
| Mean single sequence MFE | -20.69 |
| Consensus MFE | -13.40 |
| Energy contribution | -15.35 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3040581 107 - 27905053 AUCAAUCUA-UCU---UCUUUUCCUUACCAAUUGCAGAUCCGCUCCAUUGGCACCUCCUUGAGCAUGGCCACAUUUAGCGGAUUUAUCUUCGUGGCUCUAAAGAUCUACCC .........-...---(((((......(((.....(((((((((..((((((..(((...)))....)))).))..))))))))).......)))....)))))....... ( -22.50) >DroGri_CAF1 41688 99 - 1 --CAAUGCA-UUUGC--UUAAUCCU-------CACAGAUACGCUCCCUUGGCACGUCCAUAUGCAUGGCCACAUUGAGCACCUUCAUCUUCGUCUCGCUCAAAAUAUAUCC --....(((-((((.--........-------..)))))..((((...((((.(((.(....).)))))))....)))).................))............. ( -14.80) >DroSim_CAF1 27813 107 - 1 AUCAAUCUA-UCU---UCUUUUCCUUACCAAUUGCAGAUCCGCUCCAUUGGCACCUCCUUGAGCAUGGCCACAUUUAGCGGAUUUAUCUUCGUGGCUCUGAAGAUCUACCC ........(-(((---((....((...........(((((((((..((((((..(((...)))....)))).))..)))))))))........))....))))))...... ( -23.71) >DroEre_CAF1 28807 109 - 1 UUCCAUCUA-UUUCUAUAUUUUCCUUACCAA-UGCAGAUCCGCUCCAUUGGCACCUCCUUGAGCAUGGCCACAUUUAGUGGAUUUAUCUUUGUGGCACUGAAGAUCUACCC .........-.......((((((....(((.-...(((((((((..((((((..(((...)))....)))).))..))))))))).......)))....))))))...... ( -20.90) >DroYak_CAF1 29473 107 - 1 UGCAAUUUA-C--GAAUGUUUUCCUUACCAA-UGCAGAUCCGCUCCAUUGGCACCUCCUUGAGCAUGGCCACAUUUAGCGGAUUUAUCUUUGUGGCUCUGAAGAUCUACCC .(((.....-.--(((....)))........-)))(((((((((..((((((..(((...)))....)))).))..)))))))))......((((.((....)).)))).. ( -23.44) >DroAna_CAF1 30304 108 - 1 UUCAACAUAAUGA---UCUUUAUUUUCCCACCUCCAGAUCCGAUCCAUUGGCACCUCCCUGAGCAUGGCCACGUUUAGCGGCUUCAUCUUUGUGUCUCUGAAGAUCUACCC ...........((---((((((......(((....(((((((......((((..(((...)))....)))).......)))....))))..)))....))))))))..... ( -18.82) >consensus UUCAAUCUA_UCU___UCUUUUCCUUACCAA_UGCAGAUCCGCUCCAUUGGCACCUCCUUGAGCAUGGCCACAUUUAGCGGAUUUAUCUUCGUGGCUCUGAAGAUCUACCC ...................................(((((((((....((((..(((...)))....)))).....)))))))))(((((((......)))))))...... (-13.40 = -15.35 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:00 2006