Locus 9

Sequence ID 3R_DroMel_CAF1
Location 136,021 – 136,118
Length 97
Max. P 0.661265
window21

overview

Window 1

Location 136,021 – 136,118
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 81.10
Mean single sequence MFE -29.87
Consensus MFE -18.33
Energy contribution -18.67
Covariance contribution 0.34
Combinations/Pair 1.27
Mean z-score -1.88
Structure conservation index 0.61
SVM decision value 0.27
SVM RNA-class probability 0.661265
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 136021 97 + 27905053
CUGCAUAGCUUGCAAGACCUCUGUAGACUUUUGCAGAGAUCCAGCUACACGCAAGGUGGCUGCAAGGAGGAUUCGAUAAUCAGGUCGUAUCAAACAA
........(((((..((.((((((((....)))))))).)).((((((.(....))))))))))))...(((.((((......)))).)))...... ( -32.80)
>DroSec_CAF1 1848 97 + 1
CUGCAUAGCUUGCAUGACUUCUGUAGACUUUUGCAGAGAUCCUGCUACUCGCAAGGUGGCUGCAAGGAGGAAUCGAUAGUCAGGUCGUAUCAGAAAA
(((.(((.((((((.((.((((((((....)))))))).))..(((((.(....)))))))))))).......((((......)))))))))).... ( -28.50)
>DroSim_CAF1 337 97 + 1
CUGCAUAGCUUGCAUGACUUCUGUAGACUUUUGCAGAGAUCCUGCUACUCGCAAGGUGGCUGCAAGGAGGAAUCGAUAGUCAGGUCGUAUCAGAAAA
(((.(((.((((((.((.((((((((....)))))))).))..(((((.(....)))))))))))).......((((......)))))))))).... ( -28.50)
>DroEre_CAF1 337 96 + 1
CUGCAUGGCCUGCAUGACCUCUGUAGACUUCUGCAGAGAACCAGCUACCCGCAAGGUGGCUACAAG-AGGAUUCGAUAGUCAGGUCGUGUCAAAGAA
..(((((((((((.....((((((((....))))))))....((((((.(....))))))).....-...........).))))))))))....... ( -38.20)
>DroYak_CAF1 337 97 + 1
UUGCAUGGCUUGCAAGACGUCUGUAGACUUUUGCAAAGAUCCAGCUACACGCAAGGUGGCUACAAGUAGGAUUCGAUAGCCGGGUCUUGUGAAAGAA
(((((.....)))))............((((..(((.(((((((((((.(....))))))).......((.........))))))))))..)))).. ( -31.50)
>DroMoj_CAF1 337 95 + 1
CUGCAUGGCCUGCAUGACUUCUGUGGAUUUCUGCAAAGAACCAGCCACCCGCAAUGUAGCUAUAAAAGAAAUUCAAAGAUCAAUU--AGUGGCAGUA
(((((((((.(((((.......((((..((((....))))....)))).....))))))))))....(.....)...........--....)))).. ( -19.70)
>consensus
CUGCAUAGCUUGCAUGACUUCUGUAGACUUUUGCAGAGAUCCAGCUACACGCAAGGUGGCUACAAGGAGGAUUCGAUAGUCAGGUCGUAUCAAAGAA
(((((.((.(((((.(....)))))).))..))))).......(((((.(....)))))).........(((.((((......)))).)))...... (-18.33 = -18.67 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:07 2006