Locus 898

Sequence ID 3R_DroMel_CAF1
Location 3,037,242 – 3,037,343
Length 101
Max. P 0.793372
window1427

overview

Window 7

Location 3,037,242 – 3,037,343
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 83.17
Mean single sequence MFE -22.53
Consensus MFE -16.38
Energy contribution -17.27
Covariance contribution 0.89
Combinations/Pair 1.04
Mean z-score -2.08
Structure conservation index 0.73
SVM decision value 0.59
SVM RNA-class probability 0.793372
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3037242 101 - 27905053
UGUAAGUGGUGAAAGUACUAAACGAGGGUUAAAAGAAAGUGAGUUUUAGCUAGAUUCUUUGUGCUAGGUGACUGGUAACUUCCAACUACUUUCAAUAUUAA
....((((.((((((((......((((....((((((....(((....)))...)))))).((((((....)))))).))))....)))))))).)))).. ( -25.10)
>DroSec_CAF1 24207 101 - 1
CGAUAAUGGUGAAAGUACUAAACGAGAGUUAAAAGAAAGUGAGUUUUAGCUAGAUUCUUUGUGCUAAGUGACUGGUAAAUUUCAGCUACUUUCGAUAUAAA
(((..........(((((..(((....))).((((((....(((....)))...)))))))))))(((((.((((......)))).))))))))....... ( -19.30)
>DroSim_CAF1 24420 86 - 1
CGUAAGUGGUGAAAGUACUAAACGAGAGUUAAAAGAAAGUGAGUUUUAGCUAGAUUC---------------UGGUAACUUUCAGCUACUUUCGAUAUAAA
((.((((((((((((((((((((....)))..........((((((.....))))))---------------)))).))))))).)))))).))....... ( -23.20)
>consensus
CGUAAGUGGUGAAAGUACUAAACGAGAGUUAAAAGAAAGUGAGUUUUAGCUAGAUUCUUUGUGCUA_GUGACUGGUAACUUUCAGCUACUUUCGAUAUAAA
((.((((((((((((((((((((....)))..........((((((.....))))))...............)))).))))))).)))))).))....... (-16.38 = -17.27 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:55 2006