Locus 897

Sequence ID	3R_DroMel_CAF1
Location	3,035,691 – 3,035,805
Length	114
Max. P	0.926487

overview

Window 6

Location	3,035,691 – 3,035,805
Length	114
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	80.97
Mean single sequence MFE	-32.73
Consensus MFE	-25.83
Energy contribution	-25.45
Covariance contribution	-0.38
Combinations/Pair	1.21
Mean z-score	-2.01
Structure conservation index	0.79
SVM decision value	1.18
SVM RNA-class probability	0.926487
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3035691 114 - 27905053
AUUGUGGUAGCCACGAUUCGUCGGCGGUCUACCAGACUGCCACUCGGUGGCAGUGAUGACAAAGGUACC-AAAGCUCUACCCAGGGUACUGCAAAAAAAAAAUAGCAAAAUUAUA
.(((..(((.((..........(((((((.....)))))))....(((((.(((..((..........)-)..))))))))..)).)))..)))..................... ( -34.30)
>DroSim_CAF1 22880 112 - 1
AUUGUGGUAGCCACGAUUCGUCGGCAGUCUACCAGACUGCCACUCGGUGGCAGUGAUGACAAAGGUACCCCAAACUCUACCCAGGGUACUACAAAA---AAAUAGCAGAAUUAUA
.((((.((.(((((((....))(((((((.....))))))).....)))))....)).)))).(((((((.............)))))))......---................ ( -34.92)
>DroEre_CAF1 22895 101 - 1
AUUGUGGUAGCCACGACUCGUCGGCGGUCUAGCAGACUGGCACUCGGUAGCAGUGAUGGCAAAGGUACU-A-AGCUUAGACCAGGGUACUACAAGA---A---------AUUACA
.((((((((.((.(((....)))..((((((((......)).((..(((.(..((....))..).))).-.-))..)))))).)).))))))))..---.---------...... ( -32.60)
>DroYak_CAF1 24353 111 - 1
AUUGUGGUAGCCACGACUCGACGGCGGCUUAGCAGACUGGCACUUGGUAUCAGUGAUGGCAAAGGUACU-AAAGCUUAACGCAGGGUACUGCAAAA---AAUAUGCUAAAUUAAA
.((((...((((.((......))..))))..))))..(((((.((((((((..((....))..))))))-))........((((....))))....---....)))))....... ( -29.10)
>consensus
AUUGUGGUAGCCACGACUCGUCGGCGGUCUACCAGACUGCCACUCGGUAGCAGUGAUGACAAAGGUACC_AAAGCUCAACCCAGGGUACUACAAAA___AAAUAGCAAAAUUAUA
.((((((((.((..........(((((((.....)))))))....((((.(..((....))..).))))..............)).))))))))..................... (-25.83 = -25.45 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:55 2006