Locus 896

Sequence ID 3R_DroMel_CAF1
Location 3,026,871 – 3,026,967
Length 96
Max. P 0.680134
window1425

overview

Window 5

Location 3,026,871 – 3,026,967
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 76.71
Mean single sequence MFE -35.64
Consensus MFE -17.94
Energy contribution -18.42
Covariance contribution 0.48
Combinations/Pair 1.32
Mean z-score -1.89
Structure conservation index 0.50
SVM decision value 0.30
SVM RNA-class probability 0.680134
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3026871 96 + 27905053
GAACCGAGAGAAGGAUGUUUUGGCCCCCAAGCCUGUGCAUCCGCGCUCCUUGAGAUUUCAUGGAUUCUUUGGCAUGUCGUACGUGCAUCAGCAUGU
((.((.((((((((((((...(((......)))...))))))....(((.((......)).)))))))))))....))..((((((....)))))) ( -30.10)
>DroVir_CAF1 62497 96 + 1
AGCACCCGAACGAGAUGUAUUGGCGCCCAAGCCAGUGCAUCCUCGUGCCUUGAGAUUCCAUGGACUCUUUGGUAUGUCCUAUGUGCGCCAGCAUGU
.((((....(((((((((((((((......)))))))))).)))))(((..((((.((....)).)))).))).........)))).......... ( -36.30)
>DroPse_CAF1 14880 90 + 1
GG------ACAAGGAUGUCCUGGCCCCCAAGCCAGUGCAUCCGCGUGCCUUGCGCUUCCACGGAUUUUUCGGCAUGUCGUAUGUCCGCCAGCACGU
((------(((.(((((..(((((......)))))..)))))(((((((.......((....))......)))))))....))))).......... ( -37.32)
>DroMoj_CAF1 30907 96 + 1
GUCGAAUGAUCGGGAUCCUCUGGCGCCGAAGCCCGUGCAUCCGCAGGCCUUGCGGUUCCAUGGACUCUUCGGCAUGUCCUAUGUGCGUCAGCACGU
((((...(((....)))...))))(((((((.(((((...((((((...))))))...)))))...))))))).......((((((....)))))) ( -36.60)
>DroAna_CAF1 15507 96 + 1
GAACCGGGAGAAGGAUGUCCUGGCACCCAAGCCAGUGCAUCCUCGCUCUCUGCGCUUCCAUGGAUUCUUCGGCAUGUCCUACGUCCGGCAACAUGU
((((((((((.((((((..(((((......)))))..))))))(((.....))))))))..)).)))....((((((((.......))..)))))) ( -36.20)
>DroPer_CAF1 14909 90 + 1
GG------ACAAGGAUGUCCUGGCCCCCAAGCCAGUGCAUCCGCGUGCCUUGCGCUUCCACGGAUUUUUCGGCAUGUCGUAUGUCCGCCAGCACGU
((------(((.(((((..(((((......)))))..)))))(((((((.......((....))......)))))))....))))).......... ( -37.32)
>consensus
GG__C__GACAAGGAUGUCCUGGCCCCCAAGCCAGUGCAUCCGCGUGCCUUGCGCUUCCAUGGAUUCUUCGGCAUGUCCUAUGUCCGCCAGCACGU
............((((((.(((((......))))).))))))(((.(((.......((....))......))).)))................... (-17.94 = -18.42 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:53 2006