Locus 895

Sequence ID 3R_DroMel_CAF1
Location 3,025,672 – 3,025,776
Length 104
Max. P 0.979747
window1424

overview

Window 4

Location 3,025,672 – 3,025,776
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 93.65
Mean single sequence MFE -18.23
Consensus MFE -17.15
Energy contribution -16.71
Covariance contribution -0.44
Combinations/Pair 1.15
Mean z-score -1.54
Structure conservation index 0.94
SVM decision value 1.84
SVM RNA-class probability 0.979747
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3025672 104 + 27905053
AAUUCUUCAAGAUUAUAUAGCAGUAGCUAUAAGCAACACUGUCAGCUUUUCGCUGAUACCCUUCAAAAUUAAUCACAUAAGCAGAAAAGUACGCUAUAUUUUUG
.......(((((..(((((((.((.((.....)).))..(((((((.....)))))))..................................)))))))))))) ( -19.70)
>DroSec_CAF1 12369 104 + 1
AAUUCUUCAAGAUUAUAUAGCAGUAGCUAUAAGCAACACCGUCAGCUUUUCGCUGAUACCCUUCAAAAUUAAUCACAUAAGCAGAAAAGUACGCUAUAUUUUUG
.......(((((..(((((((.((.((.....)).)).......((((((((((.........................))).)))))))..)))))))))))) ( -19.61)
>DroSim_CAF1 12523 104 + 1
AAUUCUUCAAGAUUAUAUAGCAGUAGCUAUAAGCAACACCGUCAGCUUUUCGCUGAUACCCUUCAAAAUUAAUCACAUAAGCAGAAAAGUACGCUAUAUUUUUG
.......(((((..(((((((.((.((.....)).)).......((((((((((.........................))).)))))))..)))))))))))) ( -19.61)
>DroEre_CAF1 12606 104 + 1
AAUUCUUCAAGAUUAUAUAGCAGUAGCUAUAAGCAAUACCGUCAGCUUUUCGCUGUUACCCUUCAAAAUUAAUCACAUAAGCAGAAAAGUACGCUAUAUUUUUG
.......(((((..(((((((....((.....))..........((((((((((.........................))).)))))))..)))))))))))) ( -18.51)
>DroYak_CAF1 14126 104 + 1
AAUUCUUCAAAAUUAUAUACCAGUUGCUAUCGGUAACACCGUCAGUUUUUCGCUGUUAUCAUUUUAAAAUAAUCACAUAAGCAGAAAAGUACGUUAUAUUUUUG
.......(((((.((((.....(((((.....)))))..(((.(.((((..(((.........................)))..)))).)))).)))).))))) ( -13.71)
>consensus
AAUUCUUCAAGAUUAUAUAGCAGUAGCUAUAAGCAACACCGUCAGCUUUUCGCUGAUACCCUUCAAAAUUAAUCACAUAAGCAGAAAAGUACGCUAUAUUUUUG
.......(((((..(((((((.((.((.....)).)).......((((((((((.........................))).)))))))..)))))))))))) (-17.15 = -16.71 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:52 2006