Locus 8946

Sequence ID 3R_DroMel_CAF1
Location 23,989,565 – 23,989,656
Length 91
Max. P 0.874022
window14339

overview

Window 9

Location 23,989,565 – 23,989,656
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.79
Mean single sequence MFE -24.22
Consensus MFE -16.67
Energy contribution -18.75
Covariance contribution 2.08
Combinations/Pair 1.13
Mean z-score -1.73
Structure conservation index 0.69
SVM decision value 0.88
SVM RNA-class probability 0.874022
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23989565 91 + 27905053
GCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUGUGUUCAGCUC---CCUGUUCA-----
(((((((....)))).................(((((..((((((.((....))..))))))...))))).)))(..(((...---.)))..).----- ( -26.00)
>DroVir_CAF1 211541 87 + 1
GCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAGCGGCUGCGGAAACGGAAGCCGUGUGUUGCGCUCUGUUUUUUUGUGUU------------
...((((....)))).................(((((((((((((.((....))..))))))(((...))).......)))))))..------------ ( -25.00)
>DroGri_CAF1 166276 92 + 1
GCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGGGCUCCGUGUUUUUUUUUU-------ACUGC
(((((((....))))((((((........(((.(((...((((((.((....))..)))))).))).)))......)))))).....-------..))) ( -28.44)
>DroWil_CAF1 236513 79 + 1
ACAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCUUGUGUUGUACU---------------CUGUUCA-----
(((((((....)))).................(((((....((((.((....))..))))))))).)))...---------------.......----- ( -18.80)
>DroAna_CAF1 199552 86 + 1
GCCAUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUG-----UGUUCAGCUC---UCUGUUCA-----
...........((((.................(((((..((((((.((....))..))))))...)))-----))....))))---........----- ( -20.80)
>DroPer_CAF1 207301 82 + 1
GCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUCUG------------CUGUUCA-----
(((((((....)))).................(((((..((((((.((....))..))))))...)))))...))------------)......----- ( -26.30)
>consensus
GCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGCUCUGUU____U____UCUGUUCA_____
...((((....))))...................(((..((((((.((....))..))))))...)))............................... (-16.67 = -18.75 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:16 2006