Locus 8945

Sequence ID 3R_DroMel_CAF1
Location 23,989,315 – 23,989,419
Length 104
Max. P 0.955007
window14338

overview

Window 8

Location 23,989,315 – 23,989,419
Length 104
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 79.73
Mean single sequence MFE -30.70
Consensus MFE -22.08
Energy contribution -22.88
Covariance contribution 0.80
Combinations/Pair 1.17
Mean z-score -2.16
Structure conservation index 0.72
SVM decision value 1.45
SVM RNA-class probability 0.955007
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23989315 104 - 27905053
GUUCUAAAAGUAAGUGAGCUUCGAAUACUUUUACUUAGGUUUUUCUCUGCCUGUAGCAAUAGG-GAAAAGGAGCUCGAGCAGCUAGAAAGCUCUAGCUGGAGAAG
.((((.........(((((((((((.((((......))))..)))....(((((....)))))-.....))))))))..((((((((....)))))))).)))). ( -32.40)
>DroSec_CAF1 190846 103 - 1
GUUCUAAAAGUGAGUGAGCUUCGAAUACUUUUACUCGGGUUUUUCUCUGCCUGUAGCAAUGG--GAAAAGGAGCUCGAGCAGCUAGAAAGCUCUAGCUGGAGAAG
.(((((((((((..((.....))..))))))).(((((((((((((((((.....)))..))--)))...)))))))))((((((((....)))))))).)))). ( -34.30)
>DroSim_CAF1 187035 104 - 1
GUUCUAAAAGUGAGUGAGCUUCGGAUACUUUUACUUGGGUUUUUCUCUGCCUGUAGCACUGGG-GAAAAGGAGCUCGAGCAGCUAGAAAGCUCUAGCUGGAGAAG
.((((.........((((((((....((((......))))((((((((((.....))...)))-)))))))))))))..((((((((....)))))))).)))). ( -32.20)
>DroEre_CAF1 199357 87 - 1
GU------------------UUGAGUACUUCUACUUGGUUUUUUCUCUACCUGUACCAUUGGGGGCAGAGGAGCUCGAGCAGCUAGAAAGCUCUGGCUGAAGAAG
((------------------((((((.(((((....(((.........))).(..((....))..)))))).))))))))(((((((....)))))))....... ( -28.80)
>DroYak_CAF1 200571 86 - 1
GU------------------UUGCGUACUUAAACUUGGUUUUUUCUCUCUCUGUACCAAUAGG-GAAAAGGAGCUCGAGCAGCUAGAAAGCUCUAGCUGGAGAAG
..------------------.......(((...(((((((((((...(((((((....)))))-)).))))))).))))((((((((....)))))))))))... ( -25.80)
>consensus
GUUCUAAAAGU_AGUGAGCUUCGAAUACUUUUACUUGGGUUUUUCUCUGCCUGUAGCAAUGGG_GAAAAGGAGCUCGAGCAGCUAGAAAGCUCUAGCUGGAGAAG
...........................(((((.(((((((((((.....(((((....))))).....)))))))))))((((((((....)))))))).))))) (-22.08 = -22.88 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:15 2006