| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,025,316 – 3,025,408 |
| Length | 92 |
| Max. P | 0.578942 |
| Location | 3,025,316 – 3,025,408 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 84.03 |
| Mean single sequence MFE | -25.05 |
| Consensus MFE | -17.13 |
| Energy contribution | -16.94 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3025316 92 + 27905053 ACGUACAUAGUUCAUUUCAAGAAUGUGUAUAUA--------AAGCAUAAAACGUGUAUGUAGAAGUUUUCCUACAGCGC----GGCAAGCUGAGCUAUGUUUAA ....((((((((((.........(((((.....--------..)))))...(((((.(((((........)))))))))----)......)))))))))).... ( -25.00) >DroSec_CAF1 12023 92 + 1 ACGUGCAUAGUUCAUUUCAAGAAUGUGUAUAUA--------AAGCAUAAGACGUGUGUGUAGAAGUUUUCCUACAACGC----GGCAAGCUGAGCUAUGUUUAA ....((((((((((.........(((((.....--------..)))))...(((((.(((((........)))))))))----)......)))))))))).... ( -25.30) >DroSim_CAF1 12177 92 + 1 ACGUGCAUAGUUCAUUUCAAGAAUGUGUAUAUA--------AAGCAUAAGACGUGUGUGUAGUAGUUUUCCUGCAACGC----GGCAAGCUGAGCUAUGUUUAA ....((((((((((.........(((((.....--------..)))))...(((((.(((((........)))))))))----)......)))))))))).... ( -24.80) >DroEre_CAF1 12257 92 + 1 ACGUACAUAGUUCAUUUCAAGAAUGUGUAUAUA--------AAGCAUAAGACGUGAAUGGGGAACUUUUCCUGCAGCGC----GACAAGCUGAGCUAUGUUUAA ....((((((((((.........(((((.....--------..)))))...((((..((((((....))))))...)))----)......)))))))))).... ( -22.60) >DroYak_CAF1 13765 92 + 1 ACGUACAUAGUUCAUUUCAAGAAUGUGUAUAUA--------AAGCAUAAGACGUGAAUGUAGAACUUUUCCUGCUACGC----GACAAGCUGAGCUAUGUUUAA ....((((((((((.........(((((.....--------..)))))...((((...((((........))))..)))----)......)))))))))).... ( -21.80) >DroPer_CAF1 12842 104 + 1 AGAUACGUAGUUCAUUUGAAGAUUGUGUAUAUACAAACAGAAAGCAUGAGGCGUGUGCGUAGGCUUUUUCCUAUUGCCCCACCCACACGCUGAACUAUGUCUAA ....(((((((((.......(.(((((....))))).)...........((((((((.((.(((...........)))..)).))))))))))))))))).... ( -30.80) >consensus ACGUACAUAGUUCAUUUCAAGAAUGUGUAUAUA________AAGCAUAAGACGUGUAUGUAGAAGUUUUCCUACAACGC____GACAAGCUGAGCUAUGUUUAA ....((((((((((.........(((((...............)))))....((((.(((((........)))))))))...........)))))))))).... (-17.13 = -16.94 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:51 2006