Locus 8933

Sequence ID 3R_DroMel_CAF1
Location 23,954,684 – 23,954,776
Length 92
Max. P 0.973531
window14322

overview

Window 2

Location 23,954,684 – 23,954,776
Length 92
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 77.58
Mean single sequence MFE -31.93
Consensus MFE -17.00
Energy contribution -17.83
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -2.64
Structure conservation index 0.53
SVM decision value 1.71
SVM RNA-class probability 0.973531
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23954684 92 + 27905053
AG-UGC-CGGCGUAUACAUCCAGCG---GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGCACAUGCAGCGACUGAGGGAAAUUUUU
..-.((-((.(...........)))---))((((((((((.((.((((((((......)))))))).))((....)).)).))))))))........ ( -32.40)
>DroGri_CAF1 128707 91 + 1
UGUUGCGUGGCAUACGAAUUCGGUG---GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGC--AUGCAGCGCAUCGGCCGCUU-UUU
......(((((.........(((((---(((.....(((((((.((((((((......)))))))).)).)--))))))).))))))))))..-... ( -31.20)
>DroEre_CAF1 164565 79 + 1
---------------CCAUCCAGCG---GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGCACAUGCAGCGACUGAGGGAAAUUUUU
---------------...(((..((---(.((((..(((((((.((((((((......)))))))).)).)))))..)).)))))..)))....... ( -28.30)
>DroWil_CAF1 198623 87 + 1
UGUUGC-UGGUAUACUGAUUCGGCGGUGGCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGG--CACAUGCA-------AGGCAACUUUUU
.(((((-(((..(((((......)))))...))...(((((((.((((((((......)))))))).)--).))))).-------.))))))..... ( -31.60)
>DroAna_CAF1 165149 92 + 1
UGUUGC-CGCUGUACUGAUUCAACG---GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGCACAUGCAGCGAGUCAGGCAAAUU-UU
..((((-((.((........)).)(---((((((..(((((((.((((((((......)))))))).)).)))))..)).))))).)))))...-.. ( -33.90)
>DroPer_CAF1 168300 91 + 1
UGUUGC-CACUGUACUGAUUCAGCA---GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGCACAUGCAGCGAGCAAGGC--AUUUUU
...(((-(.(((........)))..---((((((..(((((((.((((((((......)))))))).)).)))))..)).))))..)))--)..... ( -34.20)
>consensus
UGUUGC_CGGUGUACUGAUUCAGCG___GCUCCUCAGUGUGGCGUGAAUCGUAAAUCAACGAUUUAGGCGCACAUGCAGCGACUCAGGCAAAUUUUU
............................(((.....(((((((.((((((((......)))))))).)).)))))..)))................. (-17.00 = -17.83 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:00 2006