Locus 892

Sequence ID 3R_DroMel_CAF1
Location 3,017,427 – 3,017,533
Length 106
Max. P 0.565047
window1417

overview

Window 7

Location 3,017,427 – 3,017,533
Length 106
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 79.88
Mean single sequence MFE -21.73
Consensus MFE -14.98
Energy contribution -14.60
Covariance contribution -0.38
Combinations/Pair 1.32
Mean z-score -1.22
Structure conservation index 0.69
SVM decision value 0.06
SVM RNA-class probability 0.565047
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3017427 106 + 27905053
UAAAA-----CUAUAACGACUUUAAUAUUUUUCAGGCGUCAUCAAUAUGAGCUUUAUGCUCUUGUUCCGCGAUCUCAUACGAUUGUUUGCUUGCUACAAUGAUGGCAUCAU
.....-----........................(..(((((((....((((.....))))..((...((((((......))))))..)).........)))))))..).. ( -21.10)
>DroSim_CAF1 4328 106 + 1
UAAAA-----UUAUAACGAUUUUAAUAUUUUUCAGGCGUCAUCAACAUGAGCUUUAUGCUCUUGUUCCGCGAUCUCAUACGAUUGUUUGCUUGCUACAAUGAUGGCAUCAU
(((((-----((.....)))))))..........(..((((((((((.((((.....)))).)))...((((((......)))))).............)))))))..).. ( -23.60)
>DroEre_CAF1 4382 111 + 1
UAAAAUAUAAUUUCAACGAUUUGGAUAUUUUUCAGGCGUCAUCAAUAUGAGCUUUAUGCUCUUGUUUCGCGACCUCAUACGCUUGUUUGCUUGCUACAAUGAUGGCAUCAU
.................((((((((.....)))))..(((((((....((((.....))))((((...((((.(.((......))...).)))).)))))))))))))).. ( -21.70)
>DroWil_CAF1 6109 111 + 1
UUAAAUCUAAGCAUAAUACGUUCAUUAUAUUGCAGGUGUUAUUAACAUGAGUUUCAUGUUACUCUUUCGCGAUCUCAUACGUCUGUUUGCCUGCUAUAAUGAUGGCAUCAU
..................(((.(((((((..((((((.....(((((((.....))))))).......(((........)))......))))))))))))))))....... ( -23.60)
>DroYak_CAF1 3927 111 + 1
UAAAAUGUAAAUAUAACGAUUUUGAUCAUUUUCAGGCGUCAUCAAUAUGAGCUUUAUGCUCUUGUUCCGCGAUCUCAUACGAUUGUUUGCUUGCUACAAUGAUGGCAUUAU
....................(((((......))))).(((((((....((((.....))))..((...((((((......))))))..)).........)))))))..... ( -22.10)
>DroAna_CAF1 3559 103 + 1
---AUUAUUAAU---ACAUUUCUGAUCCA--AUAGGCGUCAUAAAUAUGAGCUUUAUGCUCUUAUUCCGCGAUCUCAUACGUCUGUUUGCUUGCUACAACGAUGGCAUCAU
---.........---.......(((((((--....(((..((((....((((.....))))))))..))).........(((.(((..(....).)))))).))).)))). ( -18.30)
>consensus
UAAAAU_UAAAUAUAACGAUUUUAAUAUUUUUCAGGCGUCAUCAAUAUGAGCUUUAUGCUCUUGUUCCGCGAUCUCAUACGAUUGUUUGCUUGCUACAAUGAUGGCAUCAU
..................................((.((((((((((.((((.....)))).))))..((((...((......)).))))..........)))))).)).. (-14.98 = -14.60 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:46 2006