Locus 8903

Sequence ID 3R_DroMel_CAF1
Location 23,882,152 – 23,882,245
Length 93
Max. P 0.695366
window14283

overview

Window 3

Location 23,882,152 – 23,882,245
Length 93
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 86.36
Mean single sequence MFE -32.22
Consensus MFE -21.20
Energy contribution -21.92
Covariance contribution 0.72
Combinations/Pair 1.12
Mean z-score -3.76
Structure conservation index 0.66
SVM decision value 0.34
SVM RNA-class probability 0.695366
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23882152 93 - 27905053
CUGCCAGCGGAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGC--UAGAAACAGUGGCAGUACGA--CACUGGGAAAAGUGUCCUUUUAUGUCAAUUAU
((((((..(((((((.....)))))))..)))))).(((((--((.......)))))))..((--((((......))))))................ ( -32.50)
>DroSec_CAF1 88064 93 - 1
CUGCCAGCGAAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGU--UGGAAAAUGUGGCAGUACGA--CACUGGGAAAACUGUCCUUUUAUGUCAAUUAU
((((((..(((((((.....)))))))..)))))).(((((--(.........))))))..((--((..((((......))))....))))...... ( -29.00)
>DroSim_CAF1 88151 93 - 1
CUGCCAGCGAAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGU--UGGAAACAGUGGCAGUACGA--CACUGGGAAAAGUGUCCUUUUAUGUCAAUUAU
((((((..(((((((.....)))))))..)))))).((..(--((....)))..)).....((--((((......))))))................ ( -35.90)
>DroEre_CAF1 91994 94 - 1
CUGCCAGCGAAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGC--UGGAAACAGUGGCAGUACGAAACACUGGGAAAAGUGUCCU-UUAUGUCAAUUAU
((((((..(((((((.....)))))))..)))))).((..(--((....)))..))........(((((......)))))...-............. ( -35.10)
>DroYak_CAF1 94428 95 - 1
CUGCCAGCGAAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGCUCUGGAAACAGUGGCAGUACGA--CACUGGGAAAAGUGUCCUUUUAUGUCAAUUAU
((((((..(((((((.....)))))))..)))))).(((((((((....))).))))))..((--((((......))))))................ ( -39.30)
>DroAna_CAF1 95831 82 - 1
CUGCCAGGGAGUUGCAAUUUGCAAUUUUAUGGCAGCGCUGC--UAAACA------CAGAAGGA--CACCGGAAGAAAAAUCAAUUAAU-----UGAU
((((((..(((((((.....)))))))..))))))..(((.--......------))).....--...(....)....(((((....)-----)))) ( -21.50)
>consensus
CUGCCAGCGAAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGC__UGGAAACAGUGGCAGUACGA__CACUGGGAAAAGUGUCCUUUUAUGUCAAUUAU
((((((..(((((((.....)))))))..)))))).(((((.............)))))..((......((((......))))......))...... (-21.20 = -21.92 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:23 2006