Locus 89

Sequence ID 3R_DroMel_CAF1
Location 536,333 – 536,451
Length 118
Max. P 0.819303
window150

overview

Window 0

Location 536,333 – 536,451
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.35
Mean single sequence MFE -27.92
Consensus MFE -20.68
Energy contribution -20.02
Covariance contribution -0.67
Combinations/Pair 1.24
Mean z-score -1.50
Structure conservation index 0.74
SVM decision value 0.68
SVM RNA-class probability 0.819303
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 536333 118 + 27905053
ACAGAUCUGGGCUGCACUCACGGCAAUUGUCGGCAGGUGCACAAAGCGCUAAAAUAUAUUGUUUGGGUGUAAAUUUAAAAAGACUG-CCCAACAGUUUCGAAUAUU-UUAGGUAUAUUAG
............((((((..((((....))))...))))))....((.(((((((((((((((.((((((............)).)-))))))))).....)))))-))))))....... ( -28.10)
>DroSec_CAF1 13336 118 + 1
ACAGAUCUGGGUUGCACUCACGACAAUUGUCGGCAGGUGCACAAAGCGCUCAAAUAUAUUGUUUGGGUGUAAUUUUAAAAAGACUG-CCUAACAGUUACAAAUAUU-AUAGGUAUAUUGA
....(((((...((((((..((((....))))...))))))....((((((((((.....))))))))))...........(((((-.....))))).........-.)))))....... ( -30.00)
>DroEre_CAF1 14091 119 + 1
ACAGAUCUGGGCUGCACCCACGACAAUUGUCGGCAGGUGCACAAAGCGCUCAAAUAUAUUGUAUGGGUGUAAUUUGAAAAGGACUAGCUUAACAGUUUGAAAUAUU-UUAGGUAUAUUGA
.((((.((((((((((((..((((....))))...))))).(((((((((((.((.....)).)))))))..)))).........))))...))))))).......-............. ( -31.00)
>DroYak_CAF1 13102 119 + 1
CCAGAUCUGGGCUGCACUCACGACAAUUGUCGGCAGGUGCACAAAGCGCUGAAAUAUAUUGUAUGGGUGUAAUUUUAAAAAGACUAGAAAAACAAUUUGAAAUAUU-UUAGGUAUAUUAA
....(((((((.((((((((((((....))))...(((((.....))))).............))))))))((((((((................))))))))..)-))))))....... ( -24.39)
>DroAna_CAF1 13833 119 + 1
CCAGAUCUGGGCUGCACCCACGACAAUUGUCGGCAAGUGCACAAAGCGCUCAAAUAUAUUGUUUGGGUGUGACUUAACAAUGCCAAAAUACUGAAUAUUAAUCUCU-AUACUUAUAACUA
.(((((...((((((((...((((....))))....)))))....((((((((((.....))))))))))...........)))...)).))).............-............. ( -29.20)
>DroPer_CAF1 14899 118 + 1
ACAGAUCUGGGCUGCACCCACGACAAUUGUCGCCAAGUGCACAAAGCGCUCAAAUAUAUUGUAUGGGUCUGAUUCAGUCCAACUUA-UCAUAAUCU-AUAAUCACUAAUAGCUACAAUUA
...(((.(((((((.(((((((((....))))...(((((.....))))).............)))))......)))))))....)-)).......-....................... ( -24.80)
>consensus
ACAGAUCUGGGCUGCACCCACGACAAUUGUCGGCAGGUGCACAAAGCGCUCAAAUAUAUUGUAUGGGUGUAAUUUUAAAAAGACUA_CCAAACAGUUUCAAAUAUU_AUAGGUAUAUUAA
............((((((((((((....))))...(((((.....))))).............))))))))................................................. (-20.68 = -20.02 +  -0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:45 2006