Locus 8874

Sequence ID 3R_DroMel_CAF1
Location 23,811,735 – 23,811,827
Length 92
Max. P 0.855252
window14242

overview

Window 2

Location 23,811,735 – 23,811,827
Length 92
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 91.20
Mean single sequence MFE -18.18
Consensus MFE -16.06
Energy contribution -15.95
Covariance contribution -0.11
Combinations/Pair 1.21
Mean z-score -1.67
Structure conservation index 0.88
SVM decision value 0.80
SVM RNA-class probability 0.855252
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23811735 92 + 27905053
CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAAGUUUUUU----UUUUUUAUUUGCUUAUUGGCCUUUAUCAGCGGAGCAAUUA
.............((((((((((((((.((....))....))))))......----..........(((....))).......))))))))..... ( -17.30)
>DroSec_CAF1 16962 90 + 1
CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAAGUUUUU------UCUUUAUUUGCCUAUUGGCCUUUAUCAGCGGAGCAAUUA
.............((((((((((((((.((....))....)))))).....------.........(((....))).......))))))))..... ( -19.70)
>DroSim_CAF1 17026 90 + 1
CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAAGUUUUU------UCUUUAUUUGCCUAUUGGCAUUUAUCAGCGGAGCAAUUA
.............((((((((((((((.((....))....)))))).....------....((..((((....))))..))..))))))))..... ( -22.00)
>DroEre_CAF1 17302 87 + 1
CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAUGUUU---------UUUUAUUUGCUUAUUGGCCUUUAUCAGCGGAGCAAUUA
.............((((((((..(((.(.((...((((..((.(((...---------...)))..))..))))))).)))..))))))))..... ( -17.30)
>DroYak_CAF1 17617 96 + 1
CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAAGUUUUUUUUUUUUUUUUAUUUGCUUAUUGGCCUUUAUCAGCGGAGCAAUUA
.............((((((((((((((.((....))....))))))....................(((....))).......))))))))..... ( -17.30)
>DroAna_CAF1 18067 86 + 1
CAUGUAUGAAUAAGCUCUGUUUUUAAUGUGUAAUCAAUCUGUUAG-UU---------UUUUUAUUUGCUUAUUGUCCUUUAUCAGCAGAGCAAUUA
.............((((((((..(((.(.(....((((..((.((-(.---------.....))).))..)))).)).)))..))))))))..... ( -15.50)
>consensus
CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAAGUUUUU______UUUUUAUUUGCUUAUUGGCCUUUAUCAGCGGAGCAAUUA
.............((((((((((((((.((....))....))))))....................(((....))).......))))))))..... (-16.06 = -15.95 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:45 2006