| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,811,450 – 23,811,549 |
| Length | 99 |
| Max. P | 0.679040 |
| Location | 23,811,450 – 23,811,549 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 76.22 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -13.81 |
| Energy contribution | -14.54 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.679040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23811450 99 + 27905053 AUAUCCUUGGAUA-GAUGCCUUUGCCUCGCUCGAUACAUACAUACA------UACAUAUGUGAUCAAUUUCGUGGUGUUGGCAGAGG-AAGGCCGGAAGACGUUUUC .((((....))))-...((((...((((((.((((((.(((..(((------(....))))((......))))))))))))).))))-.))))(....)........ ( -27.00) >DroPse_CAF1 17111 82 + 1 ACAUCCUUGGCCAAAAUGCCUUCGCCAUGCC----------------------ACAUAUGUGAUCAAUUUU-CGGUGGCGUCUGAUG-CACACCGGAACAGGACCU- ...((((((((.((......)).))))...(----------------------((....)))......(((-(((((((((...)))-).)))))))).))))...- ( -22.30) >DroSec_CAF1 16677 99 + 1 AUAUCCUUGGAUA-GAUGCCUUUGCCUCGGCCGAUACAUACAUAUG------UACAUAUGUGAUCAAUUUCGGGGUGUUGGCAGAGG-AAAGCCGGAAGACGUUUUC .((((....))))-((((.((((.((((.((((((((..((((((.------...))))))((......))...)))))))).))))-)))).(....).))))... ( -29.30) >DroSim_CAF1 16741 105 + 1 AUAUCCUUGGAUA-GAUGCCUUUGCCUCGGCCGAUAAAUACAUAUAUAUACAUACAUAUGUGAUCAAUUUCGGGGUGUUGGCAGAGA-AAAGCCGGAAGACGUUUUC .((((....))))-..((((..((((((((..(((..((.(((((((........)))))))))..)))))))))))..))))..((-((((.(....).).))))) ( -26.50) >DroEre_CAF1 17034 87 + 1 AUAUCCUUGGAUA-GAUGCCUUUGCCUCGCCUGAU------------------ACAUAUGUGAUCAAUU-UCGGGUGUUGGCAAAGGGAAAGCCGGAAGACGCUUUC .((((....))))-....((((((((.(((((((.------------------................-)))))))..))))))))(((((((....)..)))))) ( -32.63) >DroYak_CAF1 17344 91 + 1 AUAUCCUUGGAUA-GAUGCCUUUGCCUCGCCUGAUA--------UG------UACAUAUGUGAUCAAUUUUUGGGUGUUGGCAAAGG-CAAGCCGGAAGACGUUUUC .((((....))))-..((((((((((.((((..(.(--------(.------(((....)))....))..)..))))..))))))))-)).(.(....).)...... ( -30.70) >consensus AUAUCCUUGGAUA_GAUGCCUUUGCCUCGCCCGAUA________U_______UACAUAUGUGAUCAAUUUCGGGGUGUUGGCAGAGG_AAAGCCGGAAGACGUUUUC ...(((..((........((((((((.(((((........................................)))))..)))))))).....))))).......... (-13.81 = -14.54 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:44 2006