| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,809,316 – 23,809,425 |
| Length | 109 |
| Max. P | 0.829889 |
| Location | 23,809,316 – 23,809,425 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.83 |
| Mean single sequence MFE | -14.51 |
| Consensus MFE | -8.44 |
| Energy contribution | -10.16 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23809316 109 + 27905053 ----AAUAAUUACA-AUUUGCGGCUUGCAAUUUCAACAAUAUAAAAUUACCAA--AGUAAUUGAAAAGGCUGAAUGGCUGCAAAAAAAAACAAAAAUUAACCAA-AAAAAUGCGCCU ----..........-.(((((((((.((..(((((..........(((((...--.))))))))))..)).....)))))))))....................-............ ( -17.30) >DroSec_CAF1 14572 107 + 1 ----AAUAAUUACA-AUUUGCGGCUUGCAAUUUCAAUAAUAUAAAAUUACCAA--AGUAAUUGAAAA-GCUGAAAGGCUGCAAAA--AAACAAAAAUUAACAAAAAAAUAUGCGCCU ----..........-.(((((((((.....(((((.........((((((...--.)))))).....-..)))))))))))))).--.............................. ( -15.69) >DroSim_CAF1 14621 106 + 1 ----AAUAAUUACA-AUUUGCGGCUUGCAAUUUCAAUAAUAUAAAAUUACCAA--AGUAAUUGAAAA-GCUGAAAGGCUGCAAAA--AAACAAAAAUUAACAAA-AAAUAUGCGCCU ----..........-.(((((((((.....(((((.........((((((...--.)))))).....-..)))))))))))))).--.................-............ ( -15.69) >DroWil_CAF1 23741 100 + 1 AAAAAACAAUUACAAAUUUCUGGCAUAUUAUUUCAAUAAUAUAAUAUUACCAAAAAGUAAUUGAAAAUGUCGAAA-----CAACAAAGAACAAU-----AC-------GAUGGGCCA .....................((((((((((....))))))).......(((....(((.(((....(((.....-----..))).....))))-----))-------..)))))). ( -10.90) >DroYak_CAF1 15190 107 + 1 ----AAUAAUUACA-AUUUGCGGCUUGCAAUUUCAAUAAUAUAAAAUUACCAA--AGUAAUUGAAAA-ACUGAAAUGCUGCAAAAAACAACAAAAAUGUAC-AA-AAAAAUGAGCCU ----..........-.((((((((.....((((((.........((((((...--.)))))).....-..)))))))))))))).................-..-............ ( -15.19) >DroAna_CAF1 15123 94 + 1 ----AAUAAUUACA-AUUUGCGGCUUGCAAUUUCAAUAAUAUAAAAUUACCAA--AGUAAUUGAAAAAACUGGGA----GCAAAAAA---CGAA-----ACGAA-A---AAGGGCCG ----..........-.....((((((....((((..........((((((...--.))))))........((...----.)).....---....-----..)))-)---..)))))) ( -12.30) >consensus ____AAUAAUUACA_AUUUGCGGCUUGCAAUUUCAAUAAUAUAAAAUUACCAA__AGUAAUUGAAAA_GCUGAAAGGCUGCAAAAAAAAACAAAAAUUAAC_AA_AAAAAUGCGCCU ................((((((((......(((((.........((((((......))))))........))))).))))))))................................. ( -8.44 = -10.16 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:43 2006