Locus 886

Sequence ID 3R_DroMel_CAF1
Location 2,996,567 – 2,996,657
Length 90
Max. P 0.730416
window1405

overview

Window 5

Location 2,996,567 – 2,996,657
Length 90
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 78.77
Mean single sequence MFE -27.28
Consensus MFE -17.05
Energy contribution -18.25
Covariance contribution 1.20
Combinations/Pair 1.29
Mean z-score -1.63
Structure conservation index 0.62
SVM decision value 0.42
SVM RNA-class probability 0.730416
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2996567 90 - 27905053
GUUCUGCGGCUCCGCAAACAAACAAAUGAACAGACAGUUCUUUGGUGGAGUGGGA-------GAUCAAUUUUAAAGCAGGGGUUGUGGAACUAGGCA
((((..(((((((((.......((((.((((.....)))))))).((((((..(.-------...).))))))..)).)))))))..))))...... ( -27.70)
>DroSec_CAF1 42961 90 - 1
GUUCUGCGGCUCCGCAAACAAACAAAUGAACAGACAGUUCUGCGGAGGAGUGGGA-------GAUCACUUUUGAAGCAGGGGUUGUGGAACGGGGCA
((((..(((((((..............((((.....))))(((..((((((((..-------..))))))))...))))))))))..))))...... ( -32.40)
>DroSim_CAF1 40974 90 - 1
GUUCUGCGGCUCCGCAAACAAACAAAUGAACAGACAGUUCUGCGGAGGAGUGGGA-------GAUCACUUUUGAAGCAGGGGUUGUGGAACGGGGCA
((((..(((((((..............((((.....))))(((..((((((((..-------..))))))))...))))))))))..))))...... ( -32.40)
>DroEre_CAF1 42407 88 - 1
GUUCUGCGGCUUCGCAAACAAACAAAUGAAA--ACAGUUCCUCGGGGGAGUGGGA-------GAUCACUUUUGAAUCAGGGGUUGUGAAACGGGGCA
((((((((....)))................--((((..(((.((.(((((((..-------..)))))))....)))))..)))).....))))). ( -22.40)
>DroYak_CAF1 50422 89 - 1
GUUCUGCGGCUUUGCAAGCAAACAAAUGAAAAGACAGUUCUUCGGAGGAGUGGGA-------GAUCACUUU-AAUGCCGGGCCUGUAGAACGGGGCA
(((((((((((..(((......................((....))(((((((..-------..)))))))-..)))..)))).)))))))...... ( -29.00)
>DroAna_CAF1 35939 89 - 1
GUUCUGCGGCUCCAC----AAACAAAUGAACAGACAGCUUGUCAAAGCGGUUGGAAGCUAGGGUUAACAUUCGA----GGGGGCGUUACUAGAGGCA
.(((((((.((((..----.............(((.....)))....((..((..(((....)))..))..)).----)))).)))....))))... ( -19.80)
>consensus
GUUCUGCGGCUCCGCAAACAAACAAAUGAACAGACAGUUCUUCGGAGGAGUGGGA_______GAUCACUUUUGAAGCAGGGGUUGUGGAACGGGGCA
(((((((((((((..............((((.....))))......(((((((...........))))))).......)))))))))))))...... (-17.05 = -18.25 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:34 2006