Locus 8855

Sequence ID 3R_DroMel_CAF1
Location 23,760,535 – 23,760,641
Length 106
Max. P 0.770521
window14217

overview

Window 7

Location 23,760,535 – 23,760,641
Length 106
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 76.71
Mean single sequence MFE -33.63
Consensus MFE -22.36
Energy contribution -21.28
Covariance contribution -1.08
Combinations/Pair 1.35
Mean z-score -1.37
Structure conservation index 0.66
SVM decision value 0.53
SVM RNA-class probability 0.770521
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23760535 106 - 27905053
--CACGCCAA---UCGAAGAUAAGCUCCUGACAUGCAGCCAGCCUAUGUGUGGAAAGCGGUUUCACACGAGUUGCUGCAAAUAUUGGCCGCAGGCGAGCAGCAGCAAACAU
--..((((.(---((...)))..((.((.....((((((.(((...(((((((((.....))))))))).)))))))))......))..)).)))).((....))...... ( -30.30)
>DroVir_CAF1 13672 108 - 1
GAGCCGCCUA---UUAGCAACAAGCUAAUACUCUGCUGUCAGCCAAUGUGCAGUAAUAAGUUUCAUGCCAGCUGCUGCAAAUAUUGGCCGCAAGCGAGCAUAAGCAACUCA
(((..((.((---(((((.....)))))))(((.(((....((((((((((((((....((.....))....)))))))..)))))))....)))))).....))..))). ( -34.10)
>DroSec_CAF1 13364 106 - 1
--CACGCCAA---UCGAAGAUAAGCUCCUGACAUGCAGCCAGCCUGUGUGUGGCAAGCGGUUUCACACGAGUUGCUGCAAAUAUUGGCCGCAGGCGAGCAGCAGCAAACAU
--..((((.(---((...)))..((.((.....((((((.(((.((((((..((.....))..)))))).)))))))))......))..)).)))).((....))...... ( -32.40)
>DroSim_CAF1 13309 106 - 1
--CACGCCAA---UCGAAGAUAAGCUCCUGACAUGCAGCCAGCCUGUGUGUGGCAAGCGGUUUCACACGAGUUGCUGCAAAUAUUGGCCGCAGGCGAGCCGCAGCAAACAU
--........---..........(((.(.....((((((.(((.((((((..((.....))..)))))).)))))))))......(((((....)).)))).)))...... ( -32.50)
>DroYak_CAF1 11906 106 - 1
--CAUCCCAA---UCGAAGAUAAGCUCCUGACAUGCAGCCAGCCACUGUGUGGCAAGCGGUUUCACACGAGUUGCUGCAAAUAUUGGCCGCAGGCGAACAGCAGCAAACAC
--........---..........(((.(((...(((.(((((((((...)))))..(((((..(......)..)))))......)))).)))......))).)))...... ( -31.10)
>DroMoj_CAF1 13422 111 - 1
GAGACUUCUGCGGCCAACAACAAGCUGAUCCACUGCAGCCAGCCACUGUGCAACAGUGUGUUCCAUGCCAGCUGCUGCAAGUAUUGGCCGCAGGCGAACGUCAGCAACUCC
(((....((((((((((((......))....((((((((.((((((((.....))))).((.....))..)))))))).))).))))))))))((........))..))). ( -41.40)
>consensus
__CACGCCAA___UCGAAGAUAAGCUCCUGACAUGCAGCCAGCCAAUGUGUGGCAAGCGGUUUCACACGAGUUGCUGCAAAUAUUGGCCGCAGGCGAGCAGCAGCAAACAU
.......................(((.(((...(((((.((((...((((.(((.....))).))))...)))))))))....((.((.....)).))))).)))...... (-22.36 = -21.28 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:22 2006