Locus 884

Sequence ID 3R_DroMel_CAF1
Location 2,987,334 – 2,987,431
Length 97
Max. P 0.822400
window1403

overview

Window 3

Location 2,987,334 – 2,987,431
Length 97
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 78.83
Mean single sequence MFE -33.48
Consensus MFE -22.08
Energy contribution -21.72
Covariance contribution -0.36
Combinations/Pair 1.09
Mean z-score -1.67
Structure conservation index 0.66
SVM decision value 0.69
SVM RNA-class probability 0.822400
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2987334 97 + 27905053
CU--GCCAUUGAUGUGUGAUGACGGUUUCUGGGCGCGUCUCGCAUC----------CCAAGUGGAGAAUUGAUAUUUGCAUCGAUGGCAUUUGAUGGCGGUGGAUCAGU
.(--(((((((((((((((.(((((((....))).)))))))).((----------((....)).))..........)))))))))))).(((((........))))). ( -33.20)
>DroPse_CAF1 28926 104 + 1
AUUGGCCAUUGAUGUGUGCUGACGGUUUCUGGGCGCGUCG--CAUCGUCUCUUCGAUGAGGCAUUGGAUUGAUAUUUGCAUUGAUGGCAUUUGAUGGCUGGCGGUU---
.(..(((((..(...((((((((((((....))).))))(--((..(((..(((((((...)))))))..)))...)))......))))))..)))))..).....--- ( -33.80)
>DroEre_CAF1 33342 96 + 1
UU--GCCAUUGAUGUGUGAUGACGGUUUCUGGGCGCGUCUCCAAUC----------CCAAGUGGUGGAUUGGUAUUUGCAUCGAUGGCAUUUGAUGGCGGUGGAUCAG-
.(--(((((((((((.....(((((((....))).)))).((((((----------((.....).))))))).....))))))))))))..((((........)))).- ( -34.90)
>DroYak_CAF1 41445 96 + 1
CU--GCCAUUGAUGUGUGGUGACGGUUUCUGGGCGCGUCUCCAAUC----------CCAACUGAUGGAUUGGUAUUUGCAUCGAUGGCAUUUGAUGGCGGUGGAUCAA-
.(--(((((((((((.....(((((((....))).)))).((((((----------(........))))))).....)))))))))))).(((((........)))))- ( -34.80)
>DroAna_CAF1 26313 95 + 1
-A--GCCAUUGAUGUGUGCUGACGGUUUCUGGGCGCGUCUCCCGGC----------CAAGCCAUUGGAUUGAUAUUUGCAUCGAUGGCAUUUGAUGGCGGUUGAUCAG-
-.--((((((((((((((((.(.......).)))))((((((.(((----------...)))...)))..)))....)))))))))))...((((........)))).- ( -30.40)
>DroPer_CAF1 28040 104 + 1
AUUGGCCAUUGAUGUGUGCUGACGGUUUCUGGGCGCGUCG--CAUCGUCUCUUCGAUGAGGCAUUGGAUUGAUAUUUGCAUUGAUGGCAUUUGAUGGCUGGCGGUU---
.(..(((((..(...((((((((((((....))).))))(--((..(((..(((((((...)))))))..)))...)))......))))))..)))))..).....--- ( -33.80)
>consensus
AU__GCCAUUGAUGUGUGCUGACGGUUUCUGGGCGCGUCUCCCAUC__________CCAAGCAUUGGAUUGAUAUUUGCAUCGAUGGCAUUUGAUGGCGGUGGAUCAG_
....(((((((((((.....(((((((....))).))))..........................((((....)))))))))))))))..................... (-22.08 = -21.72 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:32 2006