Locus 8839

Sequence ID 3R_DroMel_CAF1
Location 23,666,276 – 23,666,372
Length 96
Max. P 0.782285
window14192

overview

Window 2

Location 23,666,276 – 23,666,372
Length 96
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 74.72
Mean single sequence MFE -30.87
Consensus MFE -15.95
Energy contribution -16.84
Covariance contribution 0.89
Combinations/Pair 1.24
Mean z-score -1.82
Structure conservation index 0.52
SVM decision value 0.56
SVM RNA-class probability 0.782285
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23666276 96 + 27905053
-----UGCACCCGCUUGAUGCAUU-----GCACUUUGGCGUGUUGCUGACGCCGCGGGCGA-GCUGCGAAUGCCGCAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA
-----((((....((((.(((..(-----(((((.((((((.((((.(.((((...)))).-.).)))))))))).))))))....)))..))))......)))).. ( -34.00)
>DroVir_CAF1 176201 104 + 1
CAUAUGCCACCCGUUUGAUGCAUUGCUUUGUACUUUGCCGCAUCGCUGCUGACGUUGACUGCGACGCGA---CUGAAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA
..(((((.....((.....)).(((((.(((((((((.(((.((((..(.......)...)))).))).---).))))))))...)))))............))))) ( -27.80)
>DroGri_CAF1 165954 98 + 1
AAUGUGCCACCCGUUUGAUGCAUUGCUUUGCACUUUGCCGCAUCGCUGCUGAUGUC------GAGGCGA---CUGAAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA
..(((((.....((.....)).(((((.(((((((((((((((((....)))))).------..)))..---..))))))))...)))))............))))) ( -27.10)
>DroEre_CAF1 128102 96 + 1
-----UGCACCCGCUUGAUGCAUU-----GCACUUUGGCGUGUUGCUGACGCCGCGGGCGA-GCAGCGAGUGCCGCAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA
-----((((....((((.(((..(-----(((((.((((.(((((((..((((...)))))-))))))...)))).))))))....)))..))))......)))).. ( -36.50)
>DroWil_CAF1 145452 77 + 1
-------CACCCGCUUGAUGCAUU-----GCACAUUGGCGUGUCGUU------------------GCCCAUGCCGCAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA
-------.....(((.((((((((-----((.(((.((((......)------------------))).)))..)))))))))).)))................... ( -27.50)
>DroAna_CAF1 130287 96 + 1
-----ACCACCCGCUUGAUGCAUU-----GUACUUUGGCGUGUUGCUGACGCCGCGGGCGA-GCUGCAAAUGCCGCAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA
-----.......(((.((((((((-----((.....(((((.((((.(.((((...)))).-.).))))))))))))))))))).)))................... ( -32.30)
>consensus
_____GCCACCCGCUUGAUGCAUU_____GCACUUUGGCGUGUCGCUGACGCCGCGGGCGA_GCUGCGAAUGCCGCAGUGCAUUUGGCAAAUAAGAAAAAUUGCAUA
.................(((((.......(((((.((((((.((((...................)))))))))).)))))((((..(......)..))))))))). (-15.95 = -16.84 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:58 2006