Locus 8825

Sequence ID 3R_DroMel_CAF1
Location 23,620,768 – 23,620,863
Length 95
Max. P 0.517494
window14171

overview

Window 1

Location 23,620,768 – 23,620,863
Length 95
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 78.83
Mean single sequence MFE -21.02
Consensus MFE -14.32
Energy contribution -14.52
Covariance contribution 0.20
Combinations/Pair 1.12
Mean z-score -1.46
Structure conservation index 0.68
SVM decision value -0.03
SVM RNA-class probability 0.517494
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23620768 95 + 27905053
CGACCGCACAGCUAC-CGCAUAACAUAAUGUUUUGCGGUUGGAUUUGGUCCAGCCAU-------CCAUUCAAUCCG-CCGCCUGAUCUGGCCAUAACCCAAAAC
.....((......((-((((.(((.....))).))))))((((..(((.....))))-------)))........)-).(((......)))............. ( -23.60)
>DroSec_CAF1 78527 97 + 1
CGACCGCACAGCCACCCGCAUAACAUAAUGUUUUGCGGUUGGAUUUGGUCCAGCCAU-------CCAUUCAACCCGACCGCCUGAUCUGACCAUAACCCAAAAC
.(((((.....(((.(((((.(((.....))).))))).)))...)))))(((.((.-------.(..((.....))..)..))..)))............... ( -20.90)
>DroSim_CAF1 80963 96 + 1
CGACCGCACAGCCAC-CGCAUAACAUAAUGUUUUGCGGUUGGAUUUGGUCCAGCCAU-------CCAUUCAACCCGCCCGCUUGAUCUGACCAUAACCCAAAAC
.(((((.....((((-((((.(((.....))).))))).)))...)))))......(-------(...((((.(.....).))))...)).............. ( -20.60)
>DroYak_CAF1 85418 103 + 1
CUACCGCACAGCCAC-CGCAUAACAUAAUGUUUUGCGGUUGGAUUUGCUCCAGCCAGCCACCAACCAUUCAAUCCACCGCCCUGAUAUGACCAGAACCCAUAAC
.....(((...((((-((((.(((.....))).))))).)))...))).................................(((.......))).......... ( -19.40)
>DroAna_CAF1 82520 84 + 1
UGACCGCACAGCCAC-CGCAUAACAUAAUGUUUUGCAGUUGGAUUUGGGUGAGCCAC---------ACUCCCCCGCACCACUUGCACUUGCACU----------
.....(((...((((-.(((.(((.....))).))).).)))....(((.(((....---------.))).)))(((.....)))...)))...---------- ( -20.60)
>consensus
CGACCGCACAGCCAC_CGCAUAACAUAAUGUUUUGCGGUUGGAUUUGGUCCAGCCAU_______CCAUUCAACCCGACCGCCUGAUCUGACCAUAACCCAAAAC
........(((......(((.(((.....))).)))(((((((.....)))))))..........................))).................... (-14.32 = -14.52 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:37 2006