Locus 8811

Sequence ID 3R_DroMel_CAF1
Location 23,560,951 – 23,561,053
Length 102
Max. P 0.521705
window14146

overview

Window 6

Location 23,560,951 – 23,561,053
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 90.52
Mean single sequence MFE -31.45
Consensus MFE -23.44
Energy contribution -25.12
Covariance contribution 1.69
Combinations/Pair 1.07
Mean z-score -1.56
Structure conservation index 0.75
SVM decision value -0.02
SVM RNA-class probability 0.521705
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23560951 102 + 27905053
AAUAUAUAAAAACAUUUUCCGUGUAAGGAGCGGGAGUUUUCCAGAAGCCAAAGGCUGGUCGUUGUCCCCAGCUAAACGCGGAGGGGCCGGCAUUUGGCAUAA
........(((((...((((((.......)))))))))))......((((((.(((((((.....((((.((.....)))).))))))))).)))))).... ( -32.50)
>DroSec_CAF1 22375 101 + 1
AAUAUAUGAAAACAUUUUCCGUGUAAGACGAGGGAGUU-UCCAGAAGCCAAAGGCUGGUCGUUGUUCCCAGCUAAACGUGGAGGAGCAGGCAUUUGGCAUAA
......((.((((.(((..(((.....)))..))))))-).))...((((((.(((....(((.(((((........).)))).))).))).)))))).... ( -25.60)
>DroSim_CAF1 24031 102 + 1
AAUAUAUGAAAACAUUUUCCGUGUAAGAAGAGGGAGUUUUCCAGAAGCCAAAGGCUGGUCGUUGUCCCCAGCUAAACGCAGAGGGGCCGGCAUUUGGCAUAA
.......((((((...((((...........)))))))))).....((((((.(((((.......((((.((.....))...))))))))).)))))).... ( -29.51)
>DroEre_CAF1 25414 102 + 1
CAGAUAUGAAAACAUUUUCCGUGUAAGGAGAGCGAGUUUUGCCGGAGCCAAAGGCUGGACGUUGUCCGCAGCUAAACGCGGAGGGGCCGGCGUUUGGCAUAA
.................((((.((((((........))))))))))((((((.(((((.(.((.(((((........))))).)))))))).)))))).... ( -38.20)
>consensus
AAUAUAUGAAAACAUUUUCCGUGUAAGAAGAGGGAGUUUUCCAGAAGCCAAAGGCUGGUCGUUGUCCCCAGCUAAACGCGGAGGGGCCGGCAUUUGGCAUAA
.......((((((.((((((......))))))...)))))).....((((((.((((......(((((..((.....))...))))))))).)))))).... (-23.44 = -25.12 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:15 2006