Locus 881

Sequence ID 3R_DroMel_CAF1
Location 2,980,938 – 2,981,035
Length 97
Max. P 0.550258
window1400

overview

Window 0

Location 2,980,938 – 2,981,035
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 73.61
Mean single sequence MFE -20.80
Consensus MFE -8.08
Energy contribution -10.50
Covariance contribution 2.42
Combinations/Pair 1.37
Mean z-score -1.93
Structure conservation index 0.39
SVM decision value 0.03
SVM RNA-class probability 0.550258
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2980938 97 - 27905053
GACCAUAAUAAGGGUUCGAAGAUUUUAUUGUCAGAGUAAUGAUUUUGAAUUAAUAUAAUUUGCGCGCCCAUUUGGUAUUUUAAUACUGAAAACAGGU
.(((.......((((.((.(((((.((((((((((((....)))))))..))))).))))).)).)))).((..((((....))))..))....))) ( -24.50)
>DroSec_CAF1 27486 97 - 1
GACAAUAAUAAGCGCUUCCGGAUUUUAUUGUCAGAGUAACGAUUUUGAAUCAAUUUAAUUUGCGCGCCCAUUUGGUAUUUUAAUACUGAAAUCAAGU
...........((((...((((((..(((((((((((....)))))))..))))..)))))).))))...((..((((....))))..))....... ( -20.10)
>DroSim_CAF1 25401 97 - 1
GACAAUAAUAAGGGUUUGCGGAUUUUAUUGUCAGAGUAAUGAUUUUGAAUCAAUUUAAUUUGCGCGCCCAUUUGGUAUUUUAAUACUAAAAACAAGU
...........((((.((((((((..(((((((((((....)))))))..))))..)))))))).)))).((((((((....))))))))....... ( -27.20)
>DroEre_CAF1 26747 97 - 1
GACAACAAUUAGGGCUUACAGAUUUUACUGUCGGUGUAAUGAUUUUGAAUAAGUUUAAUUUACGCGCCUAUUUGGUAUUUUAAUACUGAAAACAAGU
...........((((..((((......))))..((((((.(((((.....)))))....)))))))))).((..((((....))))..))....... ( -18.50)
>DroYak_CAF1 23914 97 - 1
GACAACAAUAAGGGUUUACAGAUUGUAGUGUCGAAAAAUAGAUUUCGAAUAAAUUUAAUUUACGCGCCCAUUUGGUAUUUUAAUACUGAAAACAAGU
...........((((....((((((.(((.((((((......))))))....)))))))))....)))).((..((((....))))..))....... ( -17.40)
>DroAna_CAF1 20237 77 - 1
UACAAUGUCAAGU----------------GGCCAAUUG-AGCUAUUC-AAAAAUUUGAUUUUGGCGCCAAGAUGGUAUAUAAAUACCAAAUU--GUU
.((((((((...(----------------((((....)-.((((.((-((....))))...)))))))).)))(((((....)))))..)))--)). ( -17.10)
>consensus
GACAAUAAUAAGGGUUUACAGAUUUUAUUGUCAGAGUAAUGAUUUUGAAUAAAUUUAAUUUGCGCGCCCAUUUGGUAUUUUAAUACUGAAAACAAGU
...........((((....(((((..(((.(((((((....)))))))...)))..)))))....)))).((((((((....))))))))....... ( -8.08 = -10.50 +   2.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:29 2006