Locus 8800

Sequence ID 3R_DroMel_CAF1
Location 23,525,023 – 23,525,122
Length 99
Max. P 0.500000
window14132

overview

Window 2

Location 23,525,023 – 23,525,122
Length 99
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 83.15
Mean single sequence MFE -19.04
Consensus MFE -14.50
Energy contribution -14.70
Covariance contribution 0.20
Combinations/Pair 1.18
Mean z-score -1.38
Structure conservation index 0.76
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23525023 99 - 27905053
CACCACUAACCCAACGGCAUCCACCAUCC-ACAGCUCACACCUCCUUGCUUUACGAGAAGGUCUGUGUGCUCUUCAACAUUGCCGCCCUGCAGAGCAACA
..............(((((..........-..(((.(((((((.((((.....)))).))))..))).))).........)))))...(((...)))... ( -20.40)
>DroSec_CAF1 4021 99 - 1
CACCACUAACACCACGGCGUCCCCCAUCC-ACAGCUCACACCUCCUUGCUCUACGAGAAGGUCUGCGUGCUAUUCAACAUUGCCGCCCUGCAGAGCAACA
...............((......))....-...((((..((((.((((.....)))).))))..(((.((...........)))))......)))).... ( -19.30)
>DroSim_CAF1 3772 99 - 1
CACCACUAACACCACGGCGUCCCCCAUCC-ACAGCUCACACCUCCUUGCUCUACGAGAAGGUCUGCGUGCUCUUCAACAUUGCCGCCCUGCAGAGCAACA
...............((......))....-...((((..((((.((((.....)))).))))..(((.((...........)))))......)))).... ( -19.30)
>DroEre_CAF1 4053 97 - 1
CACCACUGACCCCAA--CAUCCACAAUCC-ACAGCUCACACCUCCUUGCUCUACGAGAAGGUAUGCGUGCUCUUCAACAUUGCUGCCCUGCAGAGCAACA
...............--............-...((((..((((.((((.....)))).)))).((((.((..............))..)))))))).... ( -17.44)
>DroYak_CAF1 4050 97 - 1
CACCACUAACCUGAC--UACCCAUCAUUC-ACAGCUCACACCUCCUUGCUCUAUGAGAAGGUAUGCGUGCUCUUCAACAUUGCCGCUCUCCAGAGCUGUA
...............--............-(((((((..((((.(((.......))).))))..(((.((...........)))))......))))))). ( -22.60)
>DroAna_CAF1 3748 97 - 1
CACCAUUAACCGCUC---UUAAACUUUCCAAUAGCUCACACAUCCCUCCUGUAUGAGAAGGUCUGCGUGCUCUUUAAUAUUGCUGCCUUGCAAAGCAGUA
........((.(((.---..............((..(((.((..(((.((.....)).)))..)).)))..))......((((......))))))).)). ( -15.20)
>consensus
CACCACUAACCCCAC__CAUCCACCAUCC_ACAGCUCACACCUCCUUGCUCUACGAGAAGGUCUGCGUGCUCUUCAACAUUGCCGCCCUGCAGAGCAACA
.................................((((..((((.((((.....)))).))))..(((.((...........)))))......)))).... (-14.50 = -14.70 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:02 2006