| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,975,626 – 2,975,743 |
| Length | 117 |
| Max. P | 0.815674 |
| Location | 2,975,626 – 2,975,743 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.14 |
| Mean single sequence MFE | -23.40 |
| Consensus MFE | -12.72 |
| Energy contribution | -13.56 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815674 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2975626 117 + 27905053 UUUAACGGCCUAGCCGGUGGAUUUGCAAAUAGGAAAAUAAAUAUAAAAAA-CAAAUUGGCGGGAAACCAU--CUCAUUACUAAGGUGAGCAAAUUAACCUUUUUUUUACAUUAUCAAAUG ......(((...)))(((.(((((((........................-.........((....))..--.(((((.....)))))))))))).)))..................... ( -22.10) >DroSec_CAF1 22195 108 + 1 UCUAACGGUCUGGCCGUUGGAUUUGCAAAUUGGAAAAUAAAAACAAAAAACCAAAUUGGCGGGAAACCAUUUCUCAUUACUAAAGUGAGCAAAUUCACAUU---UUAAAAG--------- ((((((((.....))))))))(((((....((..((((............((.....)).((....))))))..))((((....)))))))))........---.......--------- ( -25.00) >DroSim_CAF1 20116 108 + 1 UCUAACGGUCUAGCCGUUGGUCUUGCAAAUAGGAAAAUAAAAACAAAAAACCAAAUUGGCGGGAAACCAUUUCUCAUUACUAAAGUGAGCAAAUUAAUAUU---UUCACGU--------- .(((((((.....)))))))............(((((((...........((.....)).((....))((((((((((.....)))))).))))...))))---)))....--------- ( -24.40) >DroEre_CAF1 21063 114 + 1 GUUAACAGUCUUGCCGUUGGUUUUGAUAAUAAAAAAAUAAACAUAAAAUA-CAAAUUGGCGGGAAACAAUUCCCCAUUACUAAAGUGAGCAGAUUAAGGGU-----AAAGCUAUCAAAUG ......((..((((((((.(((((.........))))).)))........-..((((.(((((((....)))))..((((....)))))).))))...)))-----))..))........ ( -21.40) >DroYak_CAF1 18332 114 + 1 UUUAACGGUAUUGCUGUUUGGUUUGCAAAUAGGAAAACAACAAUAAUGAC-CAAAUUGGCGGGAAAGAACUUUCCAUUACUAAAGUGAGCAAAUUGAUAGU-----UCGGCUAUCAAAUU ......(((.((.(((((((.....))))))).)).....((....))))-)......((.(((((....))))).((((....))))))...(((((((.-----....)))))))... ( -24.10) >consensus UUUAACGGUCUAGCCGUUGGAUUUGCAAAUAGGAAAAUAAAAAUAAAAAA_CAAAUUGGCGGGAAACCAUUUCUCAUUACUAAAGUGAGCAAAUUAACAUU___UUAAAGCUAUCAAAU_ .((((((((...))))))))((((((..................................(((((.....))))).((((....)))))))))).......................... (-12.72 = -13.56 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:28 2006