| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 534,595 – 534,715 |
| Length | 120 |
| Max. P | 0.732974 |
| Location | 534,595 – 534,715 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.50 |
| Mean single sequence MFE | -47.97 |
| Consensus MFE | -34.39 |
| Energy contribution | -33.87 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 534595 120 - 27905053 UAUCCUCGAUGGACUGCAUCUUGGCAUUGGCCGUUGCUGUGGCUUCGCUCAAUGAUUGCGUGGCCGCCGCUGCGGCCGUUGCUGAUUCGGUCCAGGACUCGGCGGAGUUUCCUUUUACCG ..((((((((((((((.(((..((((.(((((((.((.((((((.(((.........))).)))))).)).))))))).))))))).)))))))....)))).))).............. ( -56.00) >DroVir_CAF1 13174 120 - 1 UCUCCUCAAUGGACAGCAUUUUUGCAUUGGCCGUGGCGGUUGCCUCGCUUAGCGAUUGGGUGGCGGCCGCUGCCGCCGUUGCAGAUUCCGUCCAUGAUUCCGCCGAGUUGCCCUUCACUG ........((((((.(....((((((.((((.(..(((((((((((((...))))......)))))))))..).)))).))))))..).))))))(((((....)))))........... ( -47.30) >DroGri_CAF1 15134 120 - 1 UCUCCUCAAUGGACAGCAUCUUCGCAUUGGCCGUGGCAGUUGCCUCGCUCAGCGAUUGAGUUGCGGCCGCUGCCGCUGUUGCCGAUUCCGUCCACGACUCCGCUGAGUUGCCCUUUACCG .........(((((.((......))((((((.((((((((.(((.(((((((...))))).)).))).))))))))....))))))...)))))((((((....)))))).......... ( -45.70) >DroWil_CAF1 62707 120 - 1 UCUCCUCAAUGGACUGCAUCUUGGCAUUUGCUGUGGCUGUGGCUUCGCUUAGCGAUUGGGUGGCCGCUGCCGCUGCAGUGGCGGAUUCUGUCCACGAUUCGGCUGAAUUUCCUUUGGCUG .........(((((.(.((((.(.((((.((.(((((.((((((((((...))))......)))))).))))).)))))).))))).).))))).....((((..((.....))..)))) ( -45.60) >DroMoj_CAF1 14434 120 - 1 UCUCUUCAAUAGACAACAUCUUUGCAUUGGCAGUUGCGGUUGCCUCACUCAGCGAUUGUGUUGCGGCCGCUGCCGCCGUAGCCGAUUCCGUCCACGACUCAGCUGAGGUGCCUUUGACCG .....((((.((....((((((.((...(((.((.((((((((..(((.........)))..)))))))).)).)))((.(.((....)).).))......)).)))))).))))))... ( -36.50) >DroAna_CAF1 12136 120 - 1 UCUCCUCGAUGGACAGCAUCUUGGCGUUCGCCGUGGCGGUGGCUUCGCUCAGGGACUGAGUGGCCGCCGCAGCCGCCGUCGCCGAUUCCGUCCAGGACUCGGCCGAGUUGCCCUUAACCG ....((((((((.(.((.....(((....)))...((((((((..(((((((...))))))))))))))).)).))))))(((((.(((.....))).))))).)))............. ( -56.70) >consensus UCUCCUCAAUGGACAGCAUCUUGGCAUUGGCCGUGGCGGUGGCCUCGCUCAGCGAUUGAGUGGCCGCCGCUGCCGCCGUUGCCGAUUCCGUCCACGACUCGGCUGAGUUGCCCUUGACCG .........(((((.(.(((...(((.((((.(..((.((((((..((((((...)))))))))))).))..).)))).))).))).).)))))((((((....)))))).......... (-34.39 = -33.87 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:44 2006