Locus 8785

Sequence ID 3R_DroMel_CAF1
Location 23,473,904 – 23,474,000
Length 96
Max. P 0.569100
window14114

overview

Window 4

Location 23,473,904 – 23,474,000
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 87.78
Mean single sequence MFE -40.78
Consensus MFE -32.85
Energy contribution -34.27
Covariance contribution 1.42
Combinations/Pair 1.04
Mean z-score -1.96
Structure conservation index 0.81
SVM decision value 0.07
SVM RNA-class probability 0.569100
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23473904 96 - 27905053
CCGCAACUCAAUAUGCAGCAGGCUCGUCUGCCCAAUGCCGGCGGACAGCUUAGCCCGCCGGGCCAGGGACCACCAAGGCCACCAGGCGGAUUUCCU
..(((........))).(((((((.(((((((.......)))))))))))).))(((((.((((..((....))..))))....)))))....... ( -42.40)
>DroPse_CAF1 73682 96 - 1
CCACAGCUGAGUCUGCAGCAGCCACGUCCGCCCAAUGCAGGAGGACCUCUUUCGCCGCCCGGACAGGGACCUCCACGGCCGCCCGGCGGUUUCCCC
.....((((......))))((((..((((..((......)).)))).......((((..(((....((....))....)))..))))))))..... ( -32.40)
>DroSec_CAF1 73231 96 - 1
CCGCAACUCAACAUGCAGCAGGCUCGUCUGCCCAAUGCCGGCGGACAGCUUAGUCCGCCGGGCCAGGGACCACCAAGGCCACCAGGCGGAUUUCCC
..(((........)))...(((((.(((((((.......))))))))))))((((((((.((((..((....))..))))....)))))))).... ( -43.00)
>DroSim_CAF1 62019 96 - 1
CCGCAACUCAACAUGCAGCAGGCUCGUCUGCCCAAUGCCGGCGGGCAGCUUAGUCCGCCGGGCCAGGGACCACCAAGGCCACCAGGCGGAUUUCCC
..(((........)))...(((((.(((((((.......))))))))))))((((((((.((((..((....))..))))....)))))))).... ( -42.40)
>DroEre_CAF1 63822 96 - 1
CCGCAACUCAACAUGCAGCAGGCGCGUCUGCCCAAUGCCGGGGGACAGCUGAGUCCGCCGGGCCAAGGACCACCGAGGCCACCGGGCGGAUUUCCC
..(((........)))....((...((((((((.....(((.((((......)))).)))((((..((....))..))))...))))))))..)). ( -41.40)
>DroYak_CAF1 64049 96 - 1
CCGCAACUCAAUAUGCAGCAGGCUCGCCUGCCCAAUGCCGGCGGACAGCUGAGUCCGCCGGGCCAAGGACCACCAAGGCCACCAGGCGGAUUUCCC
((((..........((((((((....)))))....)))((((((((......))))))))((((..((....))..)))).....))))....... ( -43.10)
>consensus
CCGCAACUCAACAUGCAGCAGGCUCGUCUGCCCAAUGCCGGCGGACAGCUUAGUCCGCCGGGCCAGGGACCACCAAGGCCACCAGGCGGAUUUCCC
((((..........(((...(((......)))...)))((((((((......))))))))((((..((....))..)))).....))))....... (-32.85 = -34.27 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:45 2006