| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,972,513 – 2,972,622 |
| Length | 109 |
| Max. P | 0.708926 |
| Location | 2,972,513 – 2,972,622 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.09 |
| Mean single sequence MFE | -29.28 |
| Consensus MFE | -15.06 |
| Energy contribution | -14.90 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2972513 109 + 27905053 UACUUGUCGCAGAGGUAUUGCAUAAUGGCAAUGCUCUCCGAUAGAUAGAAACCGUCGUCGUCCAGCACGGGUAUCUCCUUUUGCGGAUUCAUCUGCA----AUG------AU-UUGAAUU (((((((.((.((((((((((......))))))).)))((((.(((.......)))))))....)))))))))((.....(((((((....))))))----)..------..-..))... ( -31.30) >DroVir_CAF1 11298 115 + 1 UACUUGUCGCACAAGUAUUGCAUAAUAGCAAUGCUCUCGGACAGAUGGAAGCCAUCGUCGUCCAGCACAGGUAUCUCCUUUUGUGGAUUCAUCUGCGGACAAUA-A----AAUAUUCAAU (((((((.((...((((((((......))))))))...((((.(((((...)))))...)))).)))))))))......((((..((....))..)))).....-.----.......... ( -35.10) >DroGri_CAF1 15030 114 + 1 UAUUUAUCGCACAGAUAUUGCAUAAUCGCAAUGCUCUCUGACAGAUGAAAGCCUUCGUCGUCUAGCACAGGUAUCUCCUUCUGCGGAUUCAGCUGCGU--AGUAUU----GAAACACAAU ((((...((((.(((((((((......)))))).)))((((..((((((....))))))((((.(((.(((.....)))..))))))))))).)))).--))))..----.......... ( -26.20) >DroWil_CAF1 15856 113 + 1 UAUUUAUCGCAAAGAUAUUGCAUAAUGGCAAUACUUUCAGACAGAUAGAAACCAUUAUCGUCCAGCACAGGAAUCUCCUUUUGGGGAUUCAUCUAGA--CAAAA-G----AAGAUUGAUG ((((.(((((((((.((((((......))))))))))..(((.(((((......))))))))..))....((((((((....)))))))).......--.....-.----..))).)))) ( -27.50) >DroMoj_CAF1 12138 115 + 1 UACUUAUCGCACAAAUAUUGCAUAAUUGCAAUGCUCUCGGACAGAUGGAAACCAUCGUCGUCCAGUACAGGUAUCUCCUUUUGUGGAUUCAUCUGUGGGUAGUA-A----GAAAUGGAAU ..(((((..(.....(((((((....))))))).....((((.(((((...)))))...))))..(((((((...(((......)))...))))))).)..)))-)----)......... ( -33.10) >DroAna_CAF1 12164 113 + 1 UAUUUAUCGCACAGAUAUUGCAUAAUGGCGAUACUCUCCGACAAAUAAAAUCCAUCGUCAUCCAGCACGGGUAUUUCCUUUUGUGGGUUCAUCUAAA----AAG-GGAUUAU-UUCCAU- ....((((.....)))).(((...((((((((.....................))))))))...))).(((....(((((((.((((....)))).)----)))-)))....-.)))..- ( -22.50) >consensus UACUUAUCGCACAGAUAUUGCAUAAUGGCAAUGCUCUCCGACAGAUAGAAACCAUCGUCGUCCAGCACAGGUAUCUCCUUUUGUGGAUUCAUCUGCA___AAUA_A____AA_AUGCAAU ........((.....((((((......))))))......(((.(((((......))))))))..)).(((((...(((......)))...)))))......................... (-15.06 = -14.90 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:26 2006