Locus 877

Sequence ID 3R_DroMel_CAF1
Location 2,972,356 – 2,972,476
Length 120
Max. P 0.847134
window1395

overview

Window 5

Location 2,972,356 – 2,972,476
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.39
Mean single sequence MFE -43.87
Consensus MFE -27.71
Energy contribution -27.47
Covariance contribution -0.24
Combinations/Pair 1.52
Mean z-score -2.13
Structure conservation index 0.63
SVM decision value 0.77
SVM RNA-class probability 0.847134
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2972356 120 + 27905053
CUUUAGCGACAUGGGCGUACGUUUGUAGUCGAAGAAAAUGGGCGCCAUGCUGUGGGCGGAUAUGGGGGCAUAGUAGAAUCCCAUGUUAAAGCAUAGCCGCUGAUUGAUUACUGCUCUCAC
..((((((.....((((..(((((...........)))))..))))..((((((....(((((((((...........)))))))))....))))))))))))................. ( -37.60)
>DroVir_CAF1 11141 120 + 1
CUUCAGAGACAUGGGCGUGCGCUCGUAGUCGAAGAAUAUGGGGGCCAUGCUAUGCGCCGAGAUUGGGGCAUAGUAGAAGCUCAUGUUGAAGCACAAACGUUGAUUGACCAGCGCCCGUUC
(((((...(((((((((.((.((((((.((...)).)))))).))).((((((((.(((....))).))))))))...)))))))))))))......(((((......)))))....... ( -44.60)
>DroGri_CAF1 14873 120 + 1
CUUCAGGGACAUCGGCGUGCGCUCGUACGCAAAGAAGAUGGGCGCCAUACUGUGUGCCGAGAUGGGGGCAUAGUAGAAGUUCAUGUUAAAGCACAAACGUUGAUUGACCAAUGCCCUCUC
.(((.((.(((.(((..(((((((((.(........)))))))).))..)))))).)))))..((((((((.((...((((.(((((........))))).)))).))..)))))))).. ( -39.90)
>DroWil_CAF1 15699 120 + 1
CUUCAGAGACAUGGGUGUUCGCUCGUAGUCAAAGAAAAUGGGUGCCAUGCUAUGGCCUGAAAUGGGAUUGUAAUAGAAACCCAUAUUAAAACACAGUCGCUGAUUGAUCAGGGCUCGUAG
.(((((.(((((((((....)))))).))).............(((((...))))))))))(((((.((........)))))))........((((((.((((....)))))))).)).. ( -31.80)
>DroMoj_CAF1 11981 120 + 1
CUUCAGGGUCAUGGGCGUGCGCUCGUAGUCGAAGAAUAUGGGCGCCAUGCUAUGCGCCGAAAUGGGCGCAUAGUAAAAGUUCAUAUUGAAGCAUAGGCGCUGAUUGACCAGCGCUCGUUC
((((((....(((((((.(((((((((.((...)).)))))))))).(((((((((((......)))))))))))...)))))).)))))).(..(((((((......)))))))..).. ( -54.30)
>DroAna_CAF1 12007 120 + 1
CUUCAGCGACAUGGGCGUACGCUCGUAGUCGAAGAAGAUGGGCGCCAUGCUAUGGGCCGAGAUGGGUGCAUAGUAGAAGCCCAUGUUAAAGCACAGCCGCUGGUUAAUCAGGGCUCGCUG
((((..((((((((((....)))))).))))..))))((((((....(((((((.(((......))).)))))))...)))))).....(((..((((.((((....)))))))).))). ( -55.00)
>consensus
CUUCAGAGACAUGGGCGUGCGCUCGUAGUCGAAGAAAAUGGGCGCCAUGCUAUGGGCCGAGAUGGGGGCAUAGUAGAAGCCCAUGUUAAAGCACAGACGCUGAUUGACCAGCGCUCGCUC
.......(((((((((...(((((((..((...))..)))))))...((((((((.((......)).))))))))...)))))))))..........(((((......)))))....... (-27.71 = -27.47 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:25 2006