Locus 8750

Sequence ID 3R_DroMel_CAF1
Location 23,364,043 – 23,364,147
Length 104
Max. P 0.561947
window14056

overview

Window 6

Location 23,364,043 – 23,364,147
Length 104
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 78.64
Mean single sequence MFE -33.73
Consensus MFE -18.04
Energy contribution -18.27
Covariance contribution 0.22
Combinations/Pair 1.06
Mean z-score -1.81
Structure conservation index 0.53
SVM decision value 0.06
SVM RNA-class probability 0.561947
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23364043 104 - 27905053
------GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGG----AGGCUGGCUGCUUCUCCAGGA---CUCCUUCUCCUUUUGACAGGACGUAAAUUCA
------.(((((.((..((..((((((.....))))))..)).))(((..(.(.((((----((.((((........))))..---))))))).)..)))).))))........... ( -31.90)
>DroSec_CAF1 24402 106 - 1
------GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGGAGGGAGGCUGGCUGCUCCUCCUC-----CACGUUCUCCUUUUGACAGAACGUAAAUUCA
------(((...)))...(..((((((.....))))))..)(((((.....)))))((((((..((.....))..).))))-----)(((((((.........)))))))....... ( -36.30)
>DroSim_CAF1 24861 106 - 1
------GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGGAGGGAGGCUGGCUGCUCCUCCUC-----CACGUUCUCCUUUUGACAGGACGUAAAUUCA
------(((...)))...(..((((((.....))))))..)(((((.....)))))((((((..((.....))..).))))-----)(((((((.........)))))))....... ( -35.80)
>DroEre_CAF1 14100 109 - 1
------GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGGAGGCAG--UGCCUGCCACUCAACUGCUGCCACUGCUCCUUGUGACUGGACGUAAAUUCA
------...((((((..((..((((((.....))))))..)).)).....((((((((((.(((--((.(.((.........)).).))))))))))))).))....))))...... ( -38.40)
>DroYak_CAF1 25972 93 - 1
------GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGGA----------CUUCGCCUCCA--------UGUUCUCCUUUUGACAGGACGUAAAUUCA
------...((((((...(..((((((.....))))))..)(((((.....)))))...----------....)))(((.--------((((........))))))).)))...... ( -24.30)
>DroAna_CAF1 26405 103 - 1
GCAUCUGCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUACG---G--CCC--AGCCUGGAUAUGGAGAGC----CG---UUCUGGUGACAGGACGUAAAUUCA
..(((((.(((.((((.((..((((((.....))))))..))(((.....))).)---)--)))--)).).)))).((((....----((---(((((....)))))))....)))) ( -35.70)
>consensus
______GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGGA___AG__UGGCUGCUCCUCCAC_____C_CGUUCUCCUUUUGACAGGACGUAAAUUCA
.........((((((..((..((((((.....))))))..)).))................................................((((......))))))))...... (-18.04 = -18.27 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:51 2006