Locus 8735

Sequence ID 3R_DroMel_CAF1
Location 23,322,682 – 23,322,780
Length 98
Max. P 0.663358
window14032

overview

Window 2

Location 23,322,682 – 23,322,780
Length 98
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 92.07
Mean single sequence MFE -30.18
Consensus MFE -28.32
Energy contribution -28.85
Covariance contribution 0.53
Combinations/Pair 1.04
Mean z-score -1.04
Structure conservation index 0.94
SVM decision value 0.27
SVM RNA-class probability 0.663358
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23322682 98 + 27905053
AUCCACGCUUGGCUUGGCACAAGUCAAAGCUAGUUGGAAGUCAAUGCGCUUGAGUGCAUUGUGGCCCGGCUUUAUCUU------CUCUUUUCGGGUGCGCUCUG
((((..((((((((((...)))))).)))).((((((....((((((((....))))))))....)))))).......------........))))........ ( -31.00)
>DroSec_CAF1 120042 98 + 1
AUCCACGCUUGGCUUGGCACAAGUCAAAGCUAGUUGGAAGUCAAUGCGCUUGAGUGCAUUGUGGCCCGGCUAUAUCUU------CUCUUUUCGGGUGCGCUCUG
((((..((((((((((...)))))).))))(((((((....((((((((....))))))))....)))))))......------........))))........ ( -32.70)
>DroSim_CAF1 124344 98 + 1
AUCCACGCUUGGCUUGGCACAAGUCAAAGCUAGUUGGAAGUCAAUGCGCUUGAGUGCAUUGUGGCCCGGCUUUAUCUU------CUCUUUUUGGGUGCGCUCUG
(((((.((((((((((...)))))).)))).((((((....((((((((....))))))))....)))))).......------.......)))))........ ( -31.30)
>DroEre_CAF1 126256 98 + 1
AUCCACGCUUGGCUUGGCACAAGUCAAAGCUAGUUGGAAGUCAAUGCGCUUGAGUGCAUUGUGGCCCGGCUUUAUCUU------CUCUUUUCGGGUGCGCACUG
.((((.(((.((((((((....))).))))))))))))(((.(((((((....)))))))(((((((((.........------......)))))).)))))). ( -31.36)
>DroYak_CAF1 131509 98 + 1
AUCCACGCUUGGCUUGGCACAAGUCAAAGCUAGUUGGAAGUCAAUGCGCUUGAGUGCAUUGUGGCCCGGCUUUAUCUU------CACUUUUCGGGUGCGCUCUG
((((..((((((((((...)))))).)))).((((((....((((((((....))))))))....)))))).......------........))))........ ( -31.00)
>DroAna_CAF1 115694 93 + 1
AUCUUCGCUUGGCUUGGCACAAGUCAAAGCUAGUUGAAAGUCAAUGCGCUUGAGUGCAUUGUGGCCCGGCUUUAUCUUUUCCAUCUCUUUUCG-----------
......((((((((((...)))))).)))).(((((.....((((((((....)))))))).....)))))......................----------- ( -23.70)
>consensus
AUCCACGCUUGGCUUGGCACAAGUCAAAGCUAGUUGGAAGUCAAUGCGCUUGAGUGCAUUGUGGCCCGGCUUUAUCUU______CUCUUUUCGGGUGCGCUCUG
((((..((((((((((...)))))).)))).((((((....((((((((....))))))))....)))))).....................))))........ (-28.32 = -28.85 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:29 2006