| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,298,304 – 23,298,398 |
| Length | 94 |
| Max. P | 0.915207 |
| Location | 23,298,304 – 23,298,398 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 72.88 |
| Mean single sequence MFE | -16.47 |
| Consensus MFE | -7.42 |
| Energy contribution | -8.20 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.45 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.915207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23298304 94 + 27905053 -UAUUUAUGUUUGCCAUACACAACA---------AACACACACUGCCAUACACGCAUACAUCCAAUUG-AGAGUUCGAUGGAAAAUCGAGCAAACAAACUACAAU -......((((((((..........---------.........(((.......)))....((((.(((-......))))))).....).)))))))......... ( -14.90) >DroPse_CAF1 100645 76 + 1 GUGUUUCUGUUUGCCCAACUCU--------------CGCAC------ACACACGCAC-AGAGC--------AGUGGAAUGUAAAGACAAGCAAACAAACUACAAU (((((..((((((((((.((((--------------.((..------......))..-)))).--------..)))..(((....))).)))))))))).))... ( -16.80) >DroSec_CAF1 95824 100 + 1 -UAUUUAUGUUUGCCAUACACAACAAACAGAACAAACACACACUGCCAUACACGC---CAUCCAAUUG-CAAGUUCGAUGGAAAAUCGAGCAAACAAACUACAAU -......((((((((............(((............))).........(---((((.(((..-...))).)))))......).)))))))......... ( -15.00) >DroSim_CAF1 99669 91 + 1 -UAUUUAUGUUUGCCAUACACAACA---------AACACACACUGCCAUACACGC---CAUCCAAUUG-AGAGUUCGAUGGAAAAUCGAGCAAACAAACUACAAU -......((((((((..........---------..........((.......))---..((((.(((-......))))))).....).)))))))......... ( -13.40) >DroEre_CAF1 102199 81 + 1 -UAUUUAUGUUUGCCACACACAACA---------AAC----------ACACACUC---CAUCCAGUUGGAGAGUUCGGCGGAAAAUCGAGCAAACAGACU-CCAU -......(((((((...........---------...----------..((.(((---((......))))).))((((.......)))))))))))....-.... ( -16.90) >DroYak_CAF1 99503 89 + 1 -UAUUUAUGUUUGCCAUACACAACA---------ACCA---ACUGCCAUACACUC---CAUUCAAUUGGAGAGUUUGGUGGAAAAUCGAGCAAACAAACUGGCAU -..........(((((.........---------....---.(..(((.((.(((---((......))))).)).)))..)......(......)....))))). ( -21.80) >consensus _UAUUUAUGUUUGCCAUACACAACA_________AACACACACUGCCAUACACGC___CAUCCAAUUG_AGAGUUCGAUGGAAAAUCGAGCAAACAAACUACAAU .......(((((((............................................((......))......(((((.....))))))))))))......... ( -7.42 = -8.20 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:57 2006