| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,241,168 – 23,241,265 |
| Length | 97 |
| Max. P | 0.990271 |
| Location | 23,241,168 – 23,241,265 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 83.30 |
| Mean single sequence MFE | -23.17 |
| Consensus MFE | -15.44 |
| Energy contribution | -15.25 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.18 |
| Structure conservation index | 0.67 |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.990271 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23241168 97 + 27905053 UCUCCACCUCUGCAUCCACAUCCAUAUGCGCCACCUCCCUGUCCCCUCCCAAGCAAUCCCCAGCCAUUGGGAGCACUCCACAUGGUGGGGCAUCCAU .........................((((.(((((..........(((((((((........))..)))))))..........))))).)))).... ( -26.55) >DroSec_CAF1 38858 94 + 1 GC--CACCUCUGCAUCCACAUCCAUAUGCGCCACCUCCCUGCCCCCUCCAAUCCAUUCCCCAGCCAUUGG-UGCACUCCACAUGGUGGGGCAUCCAU ..--.......((((..........))))..........((((((.................((((((((-......))).)))))))))))..... ( -19.02) >DroSim_CAF1 38749 92 + 1 GCUCCACCUCUGCAUCCACAUCCAUAUGCGCC----CCCUACCCGCUCCAAUCCAUUCCCCAGCCAUUGG-UGCACUCCACAUGGUGGGGCAUCCAU ((((((((...((((..........))))...----........((.(((((.............)))))-.)).........))))))))...... ( -24.42) >DroYak_CAF1 37041 83 + 1 UCUCCACCUCUGCAUCCACAUCCAUAUGCGGA----UC-----CAC----AUCCAAUCCCCUGCCAUUGG-AGCACUUCACAUGGUGGGGCAUCCAU .((((((((((((((..........)))))))----..-----...----.((((((........)))))-)...........)))))))....... ( -22.70) >consensus GCUCCACCUCUGCAUCCACAUCCAUAUGCGCC____CCCUGCCCCCUCCAAUCCAAUCCCCAGCCAUUGG_AGCACUCCACAUGGUGGGGCAUCCAU ...........((((..........))))............................((((.((((((((.......))).)))))))))....... (-15.44 = -15.25 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:31 2006