Locus 87

Sequence ID 3R_DroMel_CAF1
Location 529,506 – 529,604
Length 98
Max. P 0.500000
window148

overview

Window 8

Location 529,506 – 529,604
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 78.98
Mean single sequence MFE -18.38
Consensus MFE -12.54
Energy contribution -12.73
Covariance contribution 0.20
Combinations/Pair 1.31
Mean z-score -1.09
Structure conservation index 0.68
SVM decision value -0.08
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 529506 98 - 27905053
AAUUUUUAUUAUGCUUUUCACACUUUUUCACCUCCUCCUCACUGAUGUCCUGAAAUCCAGUUGCCGGCACUGGACCAUUCCUCACAUCGAUGCUGUCA
.......................................((.((((((...(((.((((((.(....)))))))...)))...)))))).))...... ( -13.80)
>DroSec_CAF1 6352 98 - 1
CAUUUUUAUUAUGCUUAUCACACUUUUUCACCUCCUCCUCACUGAUGUCCUGAAAUCCAGUGGCCGGCACUGGACCUUUCCUCACAUCGAUGCUGUCA
.......................................((.((((((...(((((((((((.....)))))))..))))...)))))).))...... ( -17.80)
>DroSim_CAF1 6125 98 - 1
CAUUUUUAUUAUGCUUAUCACACUUUUUCACCUCCUCCUCACUGAUGUCCUGAAAUCCAGUGGCCGGCACUGGACCUUUCCUCACAUCGAUGCUGUCA
.......................................((.((((((...(((((((((((.....)))))))..))))...)))))).))...... ( -17.80)
>DroEre_CAF1 7143 98 - 1
CAUUUUUAUUAUAUCUAUCGCACUUUCUCACCUCCUCCUCACUGAUGUCCUGGAAGCCAGUGGCCGGCACUGGAUUCUUUCUCACAUCGACGCUGUCG
...........................................(((((...(((((((((((.....))))))...)))))..)))))(((...))). ( -18.30)
>DroYak_CAF1 6503 88 - 1
----------GUAUCUAUCACACUUUUUCACCUCCUCCUCACUGAUGUCCUGGAAGCCAGUGGCCGGUACUGGACCCUUCCUCUCAUCAAUGCUUUCG
----------.............................((.(((((....(((((((((((.....))))))...)))))...))))).))...... ( -18.20)
>DroPer_CAF1 7416 97 - 1
CCUUCCGGCAGC-GCCAUCGCAACGCUUCACAUCCGCGUCGUUAAUGUCCUGGAAGCCCGUGGCCGGCACUGGCGACUUCUUCACAUCGAUGCUAUCG
.....((.(((.-(((.((((...(((((.((...((((.....))))..)))))))..))))..))).))).))....................... ( -24.40)
>consensus
CAUUUUUAUUAUGCCUAUCACACUUUUUCACCUCCUCCUCACUGAUGUCCUGAAAGCCAGUGGCCGGCACUGGACCCUUCCUCACAUCGAUGCUGUCA
..........................................((((((...(((.(((((((.....)))))))...)))...))))))......... (-12.54 = -12.73 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:43 2006