| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,205,068 – 23,205,182 |
| Length | 114 |
| Max. P | 0.658864 |
| Location | 23,205,068 – 23,205,182 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.84 |
| Mean single sequence MFE | -32.02 |
| Consensus MFE | -21.20 |
| Energy contribution | -22.90 |
| Covariance contribution | 1.70 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23205068 114 - 27905053 GCCCUUUCACCCGGCAGAACGUAAACCAAGUCAACUGGCUUACAUGGCACUAACAAGUGCCAAAGUCGGGCUGAAGUGCGCCGAAGGAGCGGUCCAGAAAAUUUUCUUGUAGCU ((.((((..((((((.....((((.(((.......))).)))).(((((((....)))))))..))))))..)))).))((((......))))..................... ( -37.60) >DroPse_CAF1 2562 99 - 1 CUCUCUCCACCCAGCAGCACAUAAACCAAGUCAACUGGCUUACAAGACCCUAACAAGUGCCCAAGUCAGGCUGAAGUGAA---------CGCUGUAGAA------CGAGUAGCU (((((......((((..(((.......(((((....))))).................(((.......)))....)))..---------.)))).....------.))).)).. ( -17.60) >DroSec_CAF1 2735 114 - 1 GCCCUUUCACCCGACAGAACGUAAACCAAGUCAACUGACUUACAUGGCACUAACAAGUGCCAAAGUCGGGCUGAAGUGCGCCGAAGGAGCGGUCCAGAAAAUUUUCUUGUAGCU ((.((((..((((((............(((((....)))))...(((((((....)))))))..))))))..)))).))((((......))))..................... ( -37.20) >DroSim_CAF1 2724 113 - 1 GCCCUUUCACCCGGCAGAACGUAAACCAAGUCAACUGGCUUACAUGGCACUAACAAGUGCCA-AGUCGGGCUGAAGUGCGCCGAAGGAGCGGUCCAAAAAAUUUUCUUGUAGCU ((.((((..((((((.....((((.(((.......))).)))).(((((((....)))))))-.))))))..)))).))((((......))))..................... ( -37.60) >DroEre_CAF1 2628 114 - 1 GCCCUUUCACCCGGCAGAACGUAAAGCAAGUCAACUGGCUUACAUGGCACUAACAAGUGCCAAAGUCGGGCUGAAGUGCGCCAAAGGGGCGGUCCAGAAAAUUUUCUUGUAGCU ((..(((((((((((.....((((.((.((....)).)))))).(((((((....)))))))..)))))).)))))..((((.....))))....................)). ( -38.40) >DroWil_CAF1 2560 100 - 1 GCCCGCUCG--CUAUGGCACAUAAACCAAGUCAACUUGCUUACAAGACACUAACAAGUGCCAAAGUCAGACUGAAGUGCGCCAAAGGAGUUGUCCAGAAGC------------U ....((((.--((.((((.(((......((((..((((....)))).((((....)))).........))))...))).)))).))))))...........------------. ( -23.70) >consensus GCCCUUUCACCCGGCAGAACGUAAACCAAGUCAACUGGCUUACAUGGCACUAACAAGUGCCAAAGUCGGGCUGAAGUGCGCCGAAGGAGCGGUCCAGAAAAUUUUCUUGUAGCU (((.(((((((((((............(((((....)))))....((((((....))))))...)))))).))))).).))....(((....)))................... (-21.20 = -22.90 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:20 2006