| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,186,012 – 23,186,119 |
| Length | 107 |
| Max. P | 0.994380 |
| Location | 23,186,012 – 23,186,119 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 71.57 |
| Mean single sequence MFE | -40.87 |
| Consensus MFE | -17.75 |
| Energy contribution | -18.28 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.43 |
| SVM decision value | 2.47 |
| SVM RNA-class probability | 0.994380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23186012 107 - 27905053 UUCCUUCCGAGUCUUGGGCGGCACAGUAGUGCAGCGCGUUGCGGUGACUUCGAUCCCGCUGCCGCAGCAAUUCCGGCUGUUCAACGAUGAAAUG--GAG---AACGACAGAG--- ((((......((((((((((((.......(((.(((.((.((((.((......)))))).))))).)))......))))))))).))).....)--)))---..........--- ( -36.12) >DroPse_CAF1 1275 102 - 1 UCUGUUCCAGGUCCUGCGCGGCACAAUAAUGCAGCGCGUUCCGAUUGCUGCGGUCCCGUUGCCGCAGCAGUUGGGGCUGCA-AAAG-----AUG--GAA---AAUGGCAGAU--A ((((..(((..(((.((((.(((......))).))))(((((((((((((((((......)))))))))))))))))....-....-----..)--)).---..))))))).--. ( -50.70) >DroGri_CAF1 988 105 - 1 UCUGCUCCAAAUCCUGCGCGGCACAAUAAUGCAGCGCGUUGCGGUUGCUACGGUCACGUUGCCGCAACAGUUGGGGCUGCA-ACAA-----AAAAGGAA---AA-AAUAAAAAGU ...(((((((.....((((.(((......))).))))((((((((....(((....))).))))))))..)))))))....-....-----........---..-.......... ( -38.00) >DroWil_CAF1 28301 97 - 1 UCUGUUCCACGUCCUGAGCGGCACAAUAAUGCAAGGCGUUCCGAUUACUGCGAUCUCUUUGCCGUAGCAAUUGAGGCUGCA-AAUG-----AUG--GA-------GACAUAG--- ..(((..(.((((.(..(((((.((((..(((..((((....((((.....))))....))))...)))))))..))))).-.).)-----)))--).-------.)))...--- ( -27.20) >DroYak_CAF1 483 100 - 1 UCCUCUCCGAGUCCUGGACGGCACAGUAGUGCAGCGCGUUGCGGUGGCUUCGGUCCCGCUGCCGCAGCAAUUCCGGCUGUCCAAUGAUGAAAUG--GA-UGCA------------ .....((((.(((.((((((((.......(((.(((.((.((((.(((....))))))).))))).)))......))))))))..)))....))--))-....------------ ( -42.52) >DroPer_CAF1 1408 102 - 1 UCUGUUCCAGGUCCUGCGCGGCACAAUAAUGCAGCGCGUUCCGAUUGCUGCGGUCCCGUUGCCGCAGCAGUUGGGGCUGCA-AAAG-----AUG--GAA---AAUGGAAGAU--A ..(.(((((..(((.((((.(((......))).))))(((((((((((((((((......)))))))))))))))))....-....-----..)--)).---..))))).).--. ( -50.70) >consensus UCUGUUCCAAGUCCUGCGCGGCACAAUAAUGCAGCGCGUUCCGAUUGCUGCGGUCCCGUUGCCGCAGCAAUUGGGGCUGCA_AAAG_____AUG__GAA___AA_GACAGAG___ .................(((((.....(((((...)))))(((((((((.((((......)))).))))))))).)))))................................... (-17.75 = -18.28 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:09 2006