Locus 8681

Sequence ID 3R_DroMel_CAF1
Location 23,185,496 – 23,185,587
Length 91
Max. P 0.725944
window13943

overview

Window 3

Location 23,185,496 – 23,185,587
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -18.60
Consensus MFE -18.20
Energy contribution -18.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.98
SVM decision value 0.41
SVM RNA-class probability 0.725944
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23185496 91 + 27905053
UUUGGAAAAAGUAAUUGCUUUUGCCCAAUCAGCCACUCGACACUUGCACAAAAGGCCUGGCUGACAACCAAUCGACCGACCGACCAACCAC
.((((.((((((....))))))..))))(((((((...(...(((......))).).))))))).......(((......)))........ ( -19.40)
>DroSec_CAF1 442 87 + 1
UUUGGAAAAAGUAAUUGCUUUUGCCCAAUCAGCCACUCGACACUUGCACAAAAGGCCUGGCUGACAACCAAUCGACCGACCAAC----CAC
.((((.((((((....))))))..))))(((((((...(...(((......))).).)))))))....................----... ( -18.20)
>DroEre_CAF1 713 85 + 1
UUUGGAAAAAGUAAUUGCUUUUGCCCAAUCAGCCACUCGACACUUGCACAAAAGGCCUGGCUGACAACCAAUCGACCGAGCAACC------
.((((.((((((....))))))..))))(((((((...(...(((......))).).))))))).....................------ ( -18.20)
>consensus
UUUGGAAAAAGUAAUUGCUUUUGCCCAAUCAGCCACUCGACACUUGCACAAAAGGCCUGGCUGACAACCAAUCGACCGACCAACC___CAC
.((((.((((((....))))))..))))(((((((...(...(((......))).).)))))))........................... (-18.20 = -18.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:08 2006