Locus 8663

Sequence ID 3R_DroMel_CAF1
Location 23,153,784 – 23,153,904
Length 120
Max. P 0.972104
window13911

overview

Window 1

Location 23,153,784 – 23,153,904
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.47
Mean single sequence MFE -29.73
Consensus MFE -28.04
Energy contribution -27.54
Covariance contribution -0.50
Combinations/Pair 1.13
Mean z-score -2.06
Structure conservation index 0.94
SVM decision value 1.69
SVM RNA-class probability 0.972104
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23153784 120 + 27905053
CGCCAUGUUGUUGCUUUGUUACGUUAUCUAAUUACAAAGGAAUUGUGCGGCAACGUCACACAGUUGCCGGUCCACCGAUCCCGCAACUAUCCUUCCAACAUUGUACCCACCCCUAUCUCA
.((.((((((((.((((((..............)))))).)).((((((....)).)))).((((((.((((....)).)).)))))).......)))))).))................ ( -28.64)
>DroSec_CAF1 4614 119 + 1
CGCCGUGUUGUUGCUUUGUUACGUUAUCUAAUUACAAAGGAAUUGUGCGGCAACGUCACACAGUUGCCGGUCCACCGAUCCCGCAACUAUCCUUCCAACAUUGCACCCAUCCC-AUCUCC
.((.((((((((.((((((..............)))))).)).((((((....)).)))).((((((.((((....)).)).)))))).......)))))).)).........-...... ( -31.34)
>DroSim_CAF1 9091 119 + 1
CGCCGUGUUGUUGCUUUGUUACGUUAUCUAAUUACAAAGGAAUUGUGCGGCAACGUCACACAGUUGCCGGUCCACCGAUCCUGCAACUAUCCUUCCAACAUUGUACCCAUACC-AUCUCC
....((((.(.(((..((((..((.........)).(((((..((((((....)).)))).((((((.((((....)).)).)))))).)))))..))))..))).).)))).-...... ( -29.30)
>DroYak_CAF1 9062 119 + 1
CACCGUGUUGUUGCUUUGUUACGUUAUCUAAUUACAAAGGAAUGGUGCGGCAACGUCACACAGUUGCCGGUCCAACGAUCCCGCAACUAUCCUCUCACUAUUGUUACCAGCGC-AUCUCA
....((((((...((((((..............)))))).(((((((((....))......((((((.((((....)).)).)))))).......))))))).....))))))-...... ( -29.64)
>consensus
CGCCGUGUUGUUGCUUUGUUACGUUAUCUAAUUACAAAGGAAUUGUGCGGCAACGUCACACAGUUGCCGGUCCACCGAUCCCGCAACUAUCCUUCCAACAUUGUACCCAUCCC_AUCUCA
.((.((((((((.((((((..............)))))).))..(((((....)).)))..((((((.((((....)).)).)))))).......)))))).))................ (-28.04 = -27.54 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:37 2006