| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,919,433 – 2,919,541 |
| Length | 108 |
| Max. P | 0.807132 |
| Location | 2,919,433 – 2,919,541 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 95.06 |
| Mean single sequence MFE | -28.83 |
| Consensus MFE | -26.71 |
| Energy contribution | -26.93 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2919433 108 + 27905053 UUUAGAGAUGGGAUUAUUGCGAUUACAUUAUUCAGUAUGUGAUUACAGUAUUCACGAAUAGUUCUCAGUCACUGAGAGAUAUUUUGAAUUUCUGUCACGGGACAAAGG ......(((((((.(((((..(((((((........)))))))..)))))((((.(((((.(((((((...))))))).))))))))).)))))))............ ( -28.10) >DroSec_CAF1 8942 108 + 1 UUUAAAGAUGGGAUUACUGCGAUAACAGUAUUCAGUAUGUGAUUACAGUAUUCACGAAUAGUUCUCAGUCACUGGGAGAUAUUUGGAAAUUCUGUCACGGGACACAGG ...........((.(((((......))))).)).((.(((((...(((.(((..((((((.(((((((...))))))).))))))..))).))))))))..))..... ( -27.70) >DroSim_CAF1 10237 108 + 1 UUUAAAGAUGGGAUUACUGCGAUUACAGUAUUCAGUAUGUGAUUACAGUAUUCACGAAUAGUUCUCAGUCACUGGGAGAUAUUUGGAAAUUCUGUCACGGGACACAGG ......(((((((((((((..((((((..........))))))..)))))(((.((((((.(((((((...))))))).)))))))))))))))))............ ( -30.70) >consensus UUUAAAGAUGGGAUUACUGCGAUUACAGUAUUCAGUAUGUGAUUACAGUAUUCACGAAUAGUUCUCAGUCACUGGGAGAUAUUUGGAAAUUCUGUCACGGGACACAGG ......(((((((.(((((..((((((..........))))))..)))))(((.((((((.(((((((...))))))).))))))))).)))))))............ (-26.71 = -26.93 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:08 2006